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The map label for this gene is rlpB [H]

Identifier: 82543086

GI number: 82543086

Start: 522016

End: 522597

Strand: Reverse

Name: rlpB [H]

Synonym: SBO_0505

Alternate gene names: 82543086

Gene position: 522597-522016 (Counterclockwise)

Preceding gene: 82543087

Following gene: 82543085

Centisome position: 11.56

GC content: 52.23

Gene sequence:

>582_bases
GTGCGATATCTGGCAACATTGTTGTTATCTCTGGCGGTGTTAATCACCGCCGGGTGTGGCTGGCATCTGCGTGATACCAC
GCAGGTTCCTTCCACTATGAAGGTCATGATCCTGGACTCAGGCGATCCGAACGGGCCATTAAGCCGTGCGGTGCGTAACC
AGTTACGTCTGAATGGTGTCGAGTTGCTTGATAAAGAAACCACGCGTAAGGACGTTCCATCCCTGCGTTTGGGTAAAGTG
AGCATCGCGAAAGATACCGCATCGGTATTCCGTAACGGTCAAACAGCAGAGTATCAGATGATCATGACGGTGAATGCGAC
CGTGTTGATCCCCGGCCGTGATATCTACCCGATTAGCGCCAAAGTCTTCCGTTCATTCTTCGATAACCCGCAAATGGCGT
TAGCGAAAGATAACGAACAAGACATGATCGTAAAAGAGATGTACGACCGTGCTGCCGAACAGCTGATTCGTAAGCTGCCA
AGCATCCGTGCTGCGGATATTCGTTCCGACGAAGAACAGACGTCGACCACAACGGATACTCCGGCAACGCCTGCACGCGT
CTCCACCATGCTGGGTAACTGA

Upstream 100 bases:

>100_bases
ATCTGGTAGCAAAATATCTTGATGGCGTTACCGTGCGTAAAGTGATTTACGTACCAGGTAAACTCCTCAATCTGGTCGTT
GGCTAAGCGCGGGAGGAAGC

Downstream 100 bases:

>100_bases
TGATTCGGTTGTACCCGGAACAACTCCGCGCGCAGCTCAATGAAGGGCTGCGCGCGGCGTATCTTTTACTTGGTAACGAT
CCTCTGTTATTGCAGGAAAG

Product: LPS-assembly lipoprotein RlpB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MRYLATLLLSLAVLITAGCGWHLRDTTQVPSTMKVMILDSGDPNGPLSRAVRNQLRLNGVELLDKETTRKDVPSLRLGKV
SIAKDTASVFRNGQTAEYQMIMTVNATVLIPGRDIYPISAKVFRSFFDNPQMALAKDNEQDMIVKEMYDRAAEQLIRKLP
SIRAADIRSDEEQTSTTTDTPATPARVSTMLGN

Sequences:

>Translated_193_residues
MRYLATLLLSLAVLITAGCGWHLRDTTQVPSTMKVMILDSGDPNGPLSRAVRNQLRLNGVELLDKETTRKDVPSLRLGKV
SIAKDTASVFRNGQTAEYQMIMTVNATVLIPGRDIYPISAKVFRSFFDNPQMALAKDNEQDMIVKEMYDRAAEQLIRKLP
SIRAADIRSDEEQTSTTTDTPATPARVSTMLGN
>Mature_193_residues
MRYLATLLLSLAVLITAGCGWHLRDTTQVPSTMKVMILDSGDPNGPLSRAVRNQLRLNGVELLDKETTRKDVPSLRLGKV
SIAKDTASVFRNGQTAEYQMIMTVNATVLIPGRDIYPISAKVFRSFFDNPQMALAKDNEQDMIVKEMYDRAAEQLIRKLP
SIRAADIRSDEEQTSTTTDTPATPARVSTMLGN

Specific function: Together with lptD, is involved in the assembly of LPS in the outer leaflet of the outer membrane [H]

COG id: COG2980

COG function: function code M; Rare lipoprotein B

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptE lipoprotein family [H]

Homologues:

Organism=Escherichia coli, GI1786860, Length=193, Percent_Identity=99.4818652849741, Blast_Score=394, Evalue=1e-111,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007485 [H]

Pfam domain/function: PF04390 RplB [H]

EC number: NA

Molecular weight: Translated: 21387; Mature: 21387

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYLATLLLSLAVLITAGCGWHLRDTTQVPSTMKVMILDSGDPNGPLSRAVRNQLRLNGV
CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCH
ELLDKETTRKDVPSLRLGKVSIAKDTASVFRNGQTAEYQMIMTVNATVLIPGRDIYPISA
HHHCCHHHHHCCCCCEECEEEHHHHHHHHHHCCCCCEEEEEEEECEEEEECCCCCCCCHH
KVFRSFFDNPQMALAKDNEQDMIVKEMYDRAAEQLIRKLPSIRAADIRSDEEQTSTTTDT
HHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEHHCCCCCHHCCCCCCC
PATPARVSTMLGN
CCCHHHHHHHHCC
>Mature Secondary Structure
MRYLATLLLSLAVLITAGCGWHLRDTTQVPSTMKVMILDSGDPNGPLSRAVRNQLRLNGV
CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCH
ELLDKETTRKDVPSLRLGKVSIAKDTASVFRNGQTAEYQMIMTVNATVLIPGRDIYPISA
HHHCCHHHHHCCCCCEECEEEHHHHHHHHHHCCCCCEEEEEEEECEEEEECCCCCCCCHH
KVFRSFFDNPQMALAKDNEQDMIVKEMYDRAAEQLIRKLPSIRAADIRSDEEQTSTTTDT
HHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEHHCCCCCHHCCCCCCC
PATPARVSTMLGN
CCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA