Click here to switch to the map view.

The map label for this gene is rlpA [H]

Identifier: 82543079

GI number: 82543079

Start: 514514

End: 515602

Strand: Reverse

Name: rlpA [H]

Synonym: SBO_0497

Alternate gene names: 82543079

Gene position: 515602-514514 (Counterclockwise)

Preceding gene: 82543080

Following gene: 82543078

Centisome position: 11.41

GC content: 57.67

Gene sequence:

>1089_bases
ATGCGTAAGCAGTGGCTCGGGATCTGCATCGCGGCAGGAATGCTCGCGGCATGTACAAGCGATGATGGTCAGCAACAGAC
GGTAAGTGTACCGCAGCCTGCGGTATGTAACGGCCCCATAGTTGAAATTAGCGGGGCGGACCCGCGTTTCGAACCACTGA
ACGCGACGGCAAATCAGGATTACCAGCGCGACGGTAAAAGCTACAAAATCGTGCAGGATCCGTCTCGATTTAGCCAGGCG
GGACTGGCGGCAATCTATGATGCCGAACCAGGCAGTAACCTGACGGCCTCTGGCGAAGCTTTCGATCCGACAAAGCTGAC
GGCGGCCCATCCAACGCTTCCGATCCCCAGCTACGCCAGAATCACTAACCTGGCTAACGGGCGAATGATCGTGGTGCGCA
TTAATGATCGCGGCCCTTACGGCAACGACCGCGTTATTTCGCTTTCTCGCGCGGCAGCTGACCGTCTTAACACGTCAAAC
AACACCAAAGTTCGTATCGATCCGATTATTGTCGCCCAGGATGGTTCGCTTTCTGGTCCTGGTATGGCTTGTACCACAGT
CGCCAAACAGACTTACGCCCTGCCTGCACCTCCCGATTTAAGCGGTGGCGCGGGAACAAGTTCAGTGTCTGGCCCGCAGG
GTGACATTCTTCCGGTCAGTAATTCGACGCTAAAAAGCGAAGATCCGACCGGCGCGCCGGTAACCAGTAGCGGTTTCCTC
GGCGCACCAACGACCTTAGCGCCTGGTGTACTGGAAGGCAGCGAACCGACGCCTGCGCCACAGCCCGTTGTTACAGCTCC
GTCGACAACGCCTGCAACCTCGCCTGCAATGGTGACACCGCAAGCCGCCTCGCAAAGCGCCAGCGGCAACTTTATGGTGC
AAGTCGGGGCCGTTAGCGATCAGGCTCGTGCGCAACAGTACCAACAGCAACTGGGACAGAAGTTCGGCGTCCCCGGTCGC
GTAACTCAAAATGGCGCGGTCTGGCGGATCCAGCTTGGCCCATTCGCCAGCAAAGCCGAAGCCAGTACCTTGCAGCAACG
TTTGCAAACCGAAGCCCAATTACAGTCATTTATTACCACCGCGCAGTAG

Upstream 100 bases:

>100_bases
GGAGGATCGGCGCTAATTGTGCTGATGGCTGGGTTCGGGATTGTAATGTCAATCCACACCCACAGGAAAATGTTGTCGAA
AAGCGTGTAACCGGTGCGCA

Downstream 100 bases:

>100_bases
CGTAAAGCAGGCATCTGATGTGTCAATTTTTGTAAATGACGTTAACAAAGTCACGCGGAAAGTCAGATGCCTGCCGGTAG
TGCATTTGCTATAGTAGGGC

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MRKQWLGICIAAGMLAACTSDDGQQQTVSVPQPAVCNGPIVEISGADPRFEPLNATANQDYQRDGKSYKIVQDPSRFSQA
GLAAIYDAEPGSNLTASGEAFDPTKLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPYGNDRVISLSRAAADRLNTSN
NTKVRIDPIIVAQDGSLSGPGMACTTVAKQTYALPAPPDLSGGAGTSSVSGPQGDILPVSNSTLKSEDPTGAPVTSSGFL
GAPTTLAPGVLEGSEPTPAPQPVVTAPSTTPATSPAMVTPQAASQSASGNFMVQVGAVSDQARAQQYQQQLGQKFGVPGR
VTQNGAVWRIQLGPFASKAEASTLQQRLQTEAQLQSFITTAQ

Sequences:

>Translated_362_residues
MRKQWLGICIAAGMLAACTSDDGQQQTVSVPQPAVCNGPIVEISGADPRFEPLNATANQDYQRDGKSYKIVQDPSRFSQA
GLAAIYDAEPGSNLTASGEAFDPTKLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPYGNDRVISLSRAAADRLNTSN
NTKVRIDPIIVAQDGSLSGPGMACTTVAKQTYALPAPPDLSGGAGTSSVSGPQGDILPVSNSTLKSEDPTGAPVTSSGFL
GAPTTLAPGVLEGSEPTPAPQPVVTAPSTTPATSPAMVTPQAASQSASGNFMVQVGAVSDQARAQQYQQQLGQKFGVPGR
VTQNGAVWRIQLGPFASKAEASTLQQRLQTEAQLQSFITTAQ
>Mature_362_residues
MRKQWLGICIAAGMLAACTSDDGQQQTVSVPQPAVCNGPIVEISGADPRFEPLNATANQDYQRDGKSYKIVQDPSRFSQA
GLAAIYDAEPGSNLTASGEAFDPTKLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPYGNDRVISLSRAAADRLNTSN
NTKVRIDPIIVAQDGSLSGPGMACTTVAKQTYALPAPPDLSGGAGTSSVSGPQGDILPVSNSTLKSEDPTGAPVTSSGFL
GAPTTLAPGVLEGSEPTPAPQPVVTAPSTTPATSPAMVTPQAASQSASGNFMVQVGAVSDQARAQQYQQQLGQKFGVPGR
VTQNGAVWRIQLGPFASKAEASTLQQRLQTEAQLQSFITTAQ

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=362, Percent_Identity=99.4475138121547, Blast_Score=724, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 37500; Mature: 37500

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKQWLGICIAAGMLAACTSDDGQQQTVSVPQPAVCNGPIVEISGADPRFEPLNATANQD
CCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCH
YQRDGKSYKIVQDPSRFSQAGLAAIYDAEPGSNLTASGEAFDPTKLTAAHPTLPIPSYAR
HHHCCCEEEEEECHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHH
ITNLANGRMIVVRINDRGPYGNDRVISLSRAAADRLNTSNNTKVRIDPIIVAQDGSLSGP
HHHCCCCCEEEEEECCCCCCCCCEEEEEHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCC
GMACTTVAKQTYALPAPPDLSGGAGTSSVSGPQGDILPVSNSTLKSEDPTGAPVTSSGFL
CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
GAPTTLAPGVLEGSEPTPAPQPVVTAPSTTPATSPAMVTPQAASQSASGNFMVQVGAVSD
CCCHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEECCHHHCCCCCCCEEEEECCCCC
QARAQQYQQQLGQKFGVPGRVTQNGAVWRIQLGPFASKAEASTLQQRLQTEAQLQSFITT
HHHHHHHHHHHHHHCCCCCEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHC
AQ
CC
>Mature Secondary Structure
MRKQWLGICIAAGMLAACTSDDGQQQTVSVPQPAVCNGPIVEISGADPRFEPLNATANQD
CCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCH
YQRDGKSYKIVQDPSRFSQAGLAAIYDAEPGSNLTASGEAFDPTKLTAAHPTLPIPSYAR
HHHCCCEEEEEECHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHH
ITNLANGRMIVVRINDRGPYGNDRVISLSRAAADRLNTSNNTKVRIDPIIVAQDGSLSGP
HHHCCCCCEEEEEECCCCCCCCCEEEEEHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCC
GMACTTVAKQTYALPAPPDLSGGAGTSSVSGPQGDILPVSNSTLKSEDPTGAPVTSSGFL
CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
GAPTTLAPGVLEGSEPTPAPQPVVTAPSTTPATSPAMVTPQAASQSASGNFMVQVGAVSD
CCCHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEECCHHHCCCCCCCEEEEECCCCC
QARAQQYQQQLGQKFGVPGRVTQNGAVWRIQLGPFASKAEASTLQQRLQTEAQLQSFITT
HHHHHHHHHHHHHHCCCCCEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHC
AQ
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]