Click here to switch to the map view.

The map label for this gene is ybdQ [H]

Identifier: 82543055

GI number: 82543055

Start: 491884

End: 492312

Strand: Reverse

Name: ybdQ [H]

Synonym: SBO_0472

Alternate gene names: 82543055

Gene position: 492312-491884 (Counterclockwise)

Preceding gene: 82543058

Following gene: 82543052

Centisome position: 10.89

GC content: 49.65

Gene sequence:

>429_bases
ATGTATAAGACAATCATTATGCCAGTTGATGTATTTGAAATGGAATTGAGCGACAAAGCTGTTCGCCACGCTGAATTCCT
CACCCAGGATGACGGAGTTATTCATCTACTTCACGTACTACCCGGGTCAGCCAGCCTGAGCCTGGACCGTTTTGCCGCTG
ATGTGCGTCGTTTTGAAGAGCATCTGCAACATGAAGCAGAAGAACGTCTGCAAACGATGGTCAGCCACTTCACCATCGAT
CCTTCCCGCATTAAACAACATGTCCGTTTTGGTAGCGTGCGGGATGAAGTCAATGAGTTGGCAGAAGAACTGGGGGCTGA
TGTTGTAGTTATCGGTTCTCGCAACCCATCGATTTCGACCCATCTGTTAGGTTCTAACGCCTCGAGCGTGATCCGCCACG
CCAATCTGCCTGTACTGGTCGTTCGCTAA

Upstream 100 bases:

>100_bases
ACAGAAACCGTTCGTAAGGAAAAAGAACCAGACAAATATCAGGGATAAATATTATAATCATGGCGAATGATTTGTTCATG
ATTAACAGGGAGAAAGGGTT

Downstream 100 bases:

>100_bases
CAGATAAAAGTATTTATGCCGCCCTGCCTGGAACATCCCGGCAGGGCTTTTTAATGCCATAAAAAAGCCGCTAGGTTTGA
CCCCGGCGGCTAAGCAATTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MYKTIIMPVDVFEMELSDKAVRHAEFLTQDDGVIHLLHVLPGSASLSLDRFAADVRRFEEHLQHEAEERLQTMVSHFTID
PSRIKQHVRFGSVRDEVNELAEELGADVVVIGSRNPSISTHLLGSNASSVIRHANLPVLVVR

Sequences:

>Translated_142_residues
MYKTIIMPVDVFEMELSDKAVRHAEFLTQDDGVIHLLHVLPGSASLSLDRFAADVRRFEEHLQHEAEERLQTMVSHFTID
PSRIKQHVRFGSVRDEVNELAEELGADVVVIGSRNPSISTHLLGSNASSVIRHANLPVLVVR
>Mature_142_residues
MYKTIIMPVDVFEMELSDKAVRHAEFLTQDDGVIHLLHVLPGSASLSLDRFAADVRRFEEHLQHEAEERLQTMVSHFTID
PSRIKQHVRFGSVRDEVNELAEELGADVVVIGSRNPSISTHLLGSNASSVIRHANLPVLVVR

Specific function: Unknown

COG id: COG0589

COG function: function code T; Universal stress protein UspA and related nucleotide-binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the universal stress protein A family [H]

Homologues:

Organism=Escherichia coli, GI1786824, Length=142, Percent_Identity=97.887323943662, Blast_Score=279, Evalue=7e-77,
Organism=Escherichia coli, GI87081893, Length=146, Percent_Identity=38.3561643835616, Blast_Score=98, Evalue=2e-22,

Paralogues:

None

Copy number: 180 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). 120 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014729
- InterPro:   IPR006015
- InterPro:   IPR006016 [H]

Pfam domain/function: PF00582 Usp [H]

EC number: NA

Molecular weight: Translated: 15944; Mature: 15944

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKTIIMPVDVFEMELSDKAVRHAEFLTQDDGVIHLLHVLPGSASLSLDRFAADVRRFEE
CCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
HLQHEAEERLQTMVSHFTIDPSRIKQHVRFGSVRDEVNELAEELGADVVVIGSRNPSIST
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEECCCCCCEE
HLLGSNASSVIRHANLPVLVVR
EEECCCHHHHHHHCCCCEEEEC
>Mature Secondary Structure
MYKTIIMPVDVFEMELSDKAVRHAEFLTQDDGVIHLLHVLPGSASLSLDRFAADVRRFEE
CCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
HLQHEAEERLQTMVSHFTIDPSRIKQHVRFGSVRDEVNELAEELGADVVVIGSRNPSIST
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEECCCCCCEE
HLLGSNASSVIRHANLPVLVVR
EEECCCHHHHHHHCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]