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The map label for this gene is fimZ [H]

Identifier: 82543016

GI number: 82543016

Start: 443861

End: 444436

Strand: Reverse

Name: fimZ [H]

Synonym: SBO_0429

Alternate gene names: 82543016

Gene position: 444436-443861 (Counterclockwise)

Preceding gene: 82543019

Following gene: 82543015

Centisome position: 9.83

GC content: 37.33

Gene sequence:

>576_bases
ATGGATACTCATCCTATCATCAGAATGTCTATTGAAGTTCTGTTGCAAAAAAACAGTGAATTGCAGATTGTCCTGAAAAC
GGATGATTACCGCATAACCATCGATTATCTCCGAACCCGTCCTGTTGATTTAATCATTATGGATATAGACTTGCCCGGAA
CAGACGGTTTTACCTTCCTGAAAAGGATCAAACAAATCCAGAGCACAGTGAAAGTGTTATTTTTATCATCGAAATCAGAA
TGCTTTTATGCTGGCAGAGCGATACAAGCTGGTGCTAACGGTTTTGTCAGTAAATGCAATGATCAGAATGATATTTTTCA
TGCCGTTCAGATGATCCTCTCCGGATACACGTTTTTTCCCAGCGAAACGCTTAACTATATAAAAAGCAATAAATGTAGTA
CGAATAGTTCAACGGTCACTGTGCTATCTAATCGTGAAGTGACCATATTACGTTATCTGGTTAGCGGATTATCTAATAAA
GAAATTGCCGATAAGTTATTGCTTAGCAATAAAACAGTTAGTGCGCATAAATCTAATATTTATGGCAAGGATAATGCTGC
CAACTTACTGATTTAG

Upstream 100 bases:

>100_bases
TAACGTTGGTTTTTTCTGCTCATTATTAGCTCCTTCTGATGCCATTCTATTTCAGGAAGGAGTGTCCGTTAAACTCAGGC
TACCTCAGTCGGTGATCATT

Downstream 100 bases:

>100_bases
TGTATGATGGTGATTTTAAGGTGCTTGCGTGGCTTCCATTTCCATCAGATGTCCTTCCTGCTCCGCTACTGAAGGCGTGG
TGCGTAACGGCAAAAGCACT

Product: transcriptional regulator FimZ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTRPVDLIIMDIDLPGTDGFTFLKRIKQIQSTVKVLFLSSKSE
CFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYIKSNKCSTNSSTVTVLSNREVTILRYLVSGLSNK
EIADKLLLSNKTVSAHKSNIYGKDNAANLLI

Sequences:

>Translated_191_residues
MDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTRPVDLIIMDIDLPGTDGFTFLKRIKQIQSTVKVLFLSSKSE
CFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYIKSNKCSTNSSTVTVLSNREVTILRYLVSGLSNK
EIADKLLLSNKTVSAHKSNIYGKDNAANLLI
>Mature_191_residues
MDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTRPVDLIIMDIDLPGTDGFTFLKRIKQIQSTVKVLFLSSKSE
CFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYIKSNKCSTNSSTVTVLSNREVTILRYLVSGLSNK
EIADKLLLSNKTVSAHKSNIYGKDNAANLLI

Specific function: Unknown

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786747, Length=183, Percent_Identity=100, Blast_Score=375, Evalue=1e-106,
Organism=Escherichia coli, GI1788712, Length=190, Percent_Identity=31.5789473684211, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1788222, Length=190, Percent_Identity=26.8421052631579, Blast_Score=88, Evalue=3e-19,
Organism=Escherichia coli, GI1788521, Length=189, Percent_Identity=27.5132275132275, Blast_Score=84, Evalue=5e-18,
Organism=Escherichia coli, GI1790102, Length=188, Percent_Identity=28.1914893617021, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1787473, Length=180, Percent_Identity=25, Blast_Score=61, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 21434; Mature: 21434

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTRPVDLIIMDIDLPGTDGFTFL
CCCCCHHHHHHHHHHCCCCCEEEEEECCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHH
KRIKQIQSTVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGYTFFP
HHHHHHHHHHHEEEECCCCCEEEECCEEECCCCCHHHCCCCCHHHHHHHHHHHCCCCCCC
SETLNYIKSNKCSTNSSTVTVLSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNI
HHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCC
YGKDNAANLLI
CCCCCCCCCCC
>Mature Secondary Structure
MDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTRPVDLIIMDIDLPGTDGFTFL
CCCCCHHHHHHHHHHCCCCCEEEEEECCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHH
KRIKQIQSTVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGYTFFP
HHHHHHHHHHHEEEECCCCCEEEECCEEECCCCCHHHCCCCCHHHHHHHHHHHCCCCCCC
SETLNYIKSNKCSTNSSTVTVLSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNI
HHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCC
YGKDNAANLLI
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]