| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is ybbO [H]
Identifier: 82542986
GI number: 82542986
Start: 412161
End: 412970
Strand: Reverse
Name: ybbO [H]
Synonym: SBO_0395
Alternate gene names: 82542986
Gene position: 412970-412161 (Counterclockwise)
Preceding gene: 82542988
Following gene: 82542983
Centisome position: 9.14
GC content: 53.95
Gene sequence:
>810_bases ATGACTCATAAAGCAACGGAGATCCTGACAGGTAAAGTTATGCAAAAATCGGTCTTAATTACCGGATGTTCCAGTGGAAT TGGCCTGGAAAGCGCGCTCGAATTAAAACGCCAGGGTTTTCATGTGCTGGCAGGTTGCCGAAAACCGGATGATGTTGAGC GTATGAACAACATGGGATTTACCGGCGTGTTGATCGATCTGGATTCACCAGAAAGTGTTGATCGCGCAGCAGACGAGGTG ATCGCCCTGACCGATAATTGTCTGTATGGGATCTTTAACAATGCCGGATTCGGCATGTATGGCCCCCTTTCCACCATCAG CCGTGCGCAGATGGAACAGCAGTTTTCCGCCAACTTTTTCGGCGCACACCAGCTCACCATGCGCCTGTTACCCGCGATGT TACCGCACGGTGAAGGGCGTATTGTGATGACATCATCGGTGATGGGATTAATCTCCACGCCGGGTCGTGGCGCTTACGCG GCCAGTAAATATGCGCTGGAGGCGTGGTCAGACGCGCTGCGCATGGAGCTACGCCACAGCGGAATTAAAGTCAGCCTGAT CGAACCCGGTCCCATTCGTACTCGCTTCACCGACAACGTCAACCAGACGCAAAGTGATAAACCAGTCGAAAATCCCGGCA TCGCCGCCCGCTTTACGTTGGGACCGGAAGCGGTGGTCGACAAAGTGCGCCATGCTTTTATTAGCGAGAAGCCGAAGATG CGCTATCCGGTAACGCTGGTGACCTGGGCAGTAATGGTGCTCGAGCGCCTGCTGCCTGGGCGCGTGATGGACAAAATATT GCAGGGGTGA
Upstream 100 bases:
>100_bases AAGCCACAATGGATGCAGGATGACGGTATTCATCCCAACCGCGACGCCCAGCCGTTTATTGCCGACTGGATGGCGAAGCA GTTGCAGCCTTTAGTAAATC
Downstream 100 bases:
>100_bases GTTGAAGCGCGCGCTTAAGCCCCCATGTCAAAGAAAATATCGACAACAGAGAGCGACTCCATGTCCGTAGAAAATATTGT CAACATTAACGAATCTAACC
Product: short chain dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 269; Mature: 268
Protein sequence:
>269_residues MTHKATEILTGKVMQKSVLITGCSSGIGLESALELKRQGFHVLAGCRKPDDVERMNNMGFTGVLIDLDSPESVDRAADEV IALTDNCLYGIFNNAGFGMYGPLSTISRAQMEQQFSANFFGAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYA ASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARFTLGPEAVVDKVRHAFISEKPKM RYPVTLVTWAVMVLERLLPGRVMDKILQG
Sequences:
>Translated_269_residues MTHKATEILTGKVMQKSVLITGCSSGIGLESALELKRQGFHVLAGCRKPDDVERMNNMGFTGVLIDLDSPESVDRAADEV IALTDNCLYGIFNNAGFGMYGPLSTISRAQMEQQFSANFFGAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYA ASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARFTLGPEAVVDKVRHAFISEKPKM RYPVTLVTWAVMVLERLLPGRVMDKILQG >Mature_268_residues THKATEILTGKVMQKSVLITGCSSGIGLESALELKRQGFHVLAGCRKPDDVERMNNMGFTGVLIDLDSPESVDRAADEVI ALTDNCLYGIFNNAGFGMYGPLSTISRAQMEQQFSANFFGAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYAA SKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARFTLGPEAVVDKVRHAFISEKPKMR YPVTLVTWAVMVLERLLPGRVMDKILQG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7657478, Length=188, Percent_Identity=39.3617021276596, Blast_Score=122, Evalue=4e-28, Organism=Homo sapiens, GI50726952, Length=186, Percent_Identity=38.7096774193548, Blast_Score=115, Evalue=5e-26, Organism=Homo sapiens, GI40548397, Length=262, Percent_Identity=30.5343511450382, Blast_Score=114, Evalue=1e-25, Organism=Homo sapiens, GI214010158, Length=262, Percent_Identity=30.5343511450382, Blast_Score=114, Evalue=1e-25, Organism=Homo sapiens, GI214010156, Length=262, Percent_Identity=30.5343511450382, Blast_Score=114, Evalue=1e-25, Organism=Homo sapiens, GI22758144, Length=262, Percent_Identity=30.5343511450382, Blast_Score=114, Evalue=1e-25, Organism=Homo sapiens, GI150247226, Length=254, Percent_Identity=32.6771653543307, Blast_Score=112, Evalue=4e-25, Organism=Homo sapiens, GI22507405, Length=286, Percent_Identity=30.0699300699301, Blast_Score=110, Evalue=1e-24, Organism=Homo sapiens, GI44680136, Length=289, Percent_Identity=28.719723183391, Blast_Score=108, Evalue=7e-24, Organism=Homo sapiens, GI44680133, Length=289, Percent_Identity=28.719723183391, Blast_Score=108, Evalue=7e-24, Organism=Homo sapiens, GI17738292, Length=289, Percent_Identity=28.719723183391, Blast_Score=108, Evalue=7e-24, Organism=Homo sapiens, GI19743808, Length=281, Percent_Identity=30.6049822064057, Blast_Score=104, Evalue=9e-23, Organism=Homo sapiens, GI119392083, Length=207, Percent_Identity=36.7149758454106, Blast_Score=95, Evalue=6e-20, Organism=Homo sapiens, GI223718074, Length=195, Percent_Identity=33.8461538461538, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI7706318, Length=269, Percent_Identity=26.7657992565056, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI20149619, Length=198, Percent_Identity=31.8181818181818, Blast_Score=85, Evalue=9e-17, Organism=Homo sapiens, GI157739938, Length=196, Percent_Identity=33.1632653061224, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI142976729, Length=260, Percent_Identity=27.6923076923077, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI4504503, Length=204, Percent_Identity=32.843137254902, Blast_Score=78, Evalue=7e-15, Organism=Homo sapiens, GI40807363, Length=254, Percent_Identity=30.3149606299213, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI210032110, Length=191, Percent_Identity=29.8429319371728, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI32483357, Length=189, Percent_Identity=25.3968253968254, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI32455239, Length=190, Percent_Identity=28.4210526315789, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI5031765, Length=190, Percent_Identity=28.4210526315789, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI4503817, Length=227, Percent_Identity=26.431718061674, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI1786701, Length=269, Percent_Identity=99.2565055762082, Blast_Score=555, Evalue=1e-159, Organism=Escherichia coli, GI87082100, Length=206, Percent_Identity=31.0679611650485, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1789378, Length=213, Percent_Identity=28.169014084507, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1787335, Length=192, Percent_Identity=26.0416666666667, Blast_Score=65, Evalue=7e-12, Organism=Escherichia coli, GI87082160, Length=190, Percent_Identity=25.2631578947368, Blast_Score=61, Evalue=6e-11, Organism=Escherichia coli, GI2367365, Length=189, Percent_Identity=30.6878306878307, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI115534660, Length=287, Percent_Identity=29.9651567944251, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI17507613, Length=303, Percent_Identity=26.7326732673267, Blast_Score=97, Evalue=8e-21, Organism=Caenorhabditis elegans, GI32563809, Length=303, Percent_Identity=26.7326732673267, Blast_Score=97, Evalue=9e-21, Organism=Caenorhabditis elegans, GI193210355, Length=263, Percent_Identity=30.4182509505703, Blast_Score=94, Evalue=6e-20, Organism=Caenorhabditis elegans, GI17557780, Length=297, Percent_Identity=27.9461279461279, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17570069, Length=194, Percent_Identity=32.4742268041237, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI71997402, Length=194, Percent_Identity=29.8969072164948, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17560676, Length=235, Percent_Identity=26.8085106382979, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI193203117, Length=275, Percent_Identity=27.2727272727273, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI193203115, Length=265, Percent_Identity=26.7924528301887, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6322067, Length=189, Percent_Identity=30.6878306878307, Blast_Score=77, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6323882, Length=203, Percent_Identity=27.5862068965517, Blast_Score=69, Evalue=6e-13, Organism=Drosophila melanogaster, GI21358495, Length=194, Percent_Identity=33.5051546391753, Blast_Score=101, Evalue=5e-22, Organism=Drosophila melanogaster, GI24651139, Length=237, Percent_Identity=31.6455696202532, Blast_Score=92, Evalue=4e-19, Organism=Drosophila melanogaster, GI21356301, Length=222, Percent_Identity=27.4774774774775, Blast_Score=81, Evalue=6e-16, Organism=Drosophila melanogaster, GI45554248, Length=200, Percent_Identity=33, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI24640117, Length=200, Percent_Identity=33, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI28571526, Length=185, Percent_Identity=30.2702702702703, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI24643142, Length=207, Percent_Identity=28.5024154589372, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24644339, Length=190, Percent_Identity=28.9473684210526, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 29439; Mature: 29307
Theoretical pI: Translated: 8.48; Mature: 8.48
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 5.2 %Met (Translated Protein) 6.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHKATEILTGKVMQKSVLITGCSSGIGLESALELKRQGFHVLAGCRKPDDVERMNNMGF CCCCHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHHHCCCC TGVLIDLDSPESVDRAADEVIALTDNCLYGIFNNAGFGMYGPLSTISRAQMEQQFSANFF EEEEEECCCCHHHHHHHHHEEEECCCCEEEHCCCCCCCCCCCHHHHHHHHHHHHHCCCCC GAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYAASKYALEAWSDALRMELRHS CHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHC GIKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARFTLGPEAVVDKVRHAFISEKPKM CEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCC RYPVTLVTWAVMVLERLLPGRVMDKILQG CCCHHHHHHHHHHHHHHCCHHHHHHHHCC >Mature Secondary Structure THKATEILTGKVMQKSVLITGCSSGIGLESALELKRQGFHVLAGCRKPDDVERMNNMGF CCCHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHHHCCCC TGVLIDLDSPESVDRAADEVIALTDNCLYGIFNNAGFGMYGPLSTISRAQMEQQFSANFF EEEEEECCCCHHHHHHHHHEEEECCCCEEEHCCCCCCCCCCCHHHHHHHHHHHHHCCCCC GAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYAASKYALEAWSDALRMELRHS CHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHC GIKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARFTLGPEAVVDKVRHAFISEKPKM CEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCC RYPVTLVTWAVMVLERLLPGRVMDKILQG CCCHHHHHHHHHHHHHHCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]