Click here to switch to the map view.

The map label for this gene is ybaP [H]

Identifier: 82542976

GI number: 82542976

Start: 401209

End: 402003

Strand: Reverse

Name: ybaP [H]

Synonym: SBO_0384

Alternate gene names: 82542976

Gene position: 402003-401209 (Counterclockwise)

Preceding gene: 82542978

Following gene: 82542975

Centisome position: 8.89

GC content: 52.96

Gene sequence:

>795_bases
ATGGATCTGTTGTACCGGGTAAAAACGCTTTGGGCCGCGCTGCGCGGTAATCATTACACCTGGCCTGCCATCGATATCAC
CCTTCCCGGCAATCGCCATTTTCATCTGATTGGCAGTATTCATATGGGTAGCCACGATATGACTCCCCTGCCCACCCGTT
TGCTCAAAAAGCTCAAAAACGCCGATGCGCTGATCGTCGAGGCGGATGTTTCCACCAGCGATACGCCTTTTGCTAATTTG
CCTACTTGCGAGGCGCTGGAAGAGCGCATTAACGAGGAGCAACTCCAAAATCTGCAGCACATTAGCCAGGAGATGGGCAT
TTCTCCGTCGCTCTTTTCTACTCAACCGCTGTGGCAAATCGCGATGGTTCTTCAGGCGACGCAGGCACAAAAACTGGGGC
TGCGGGCAGAATACGGTATCGATTACCAGTTATTGCAGGCGGCGAAGCAACAACATAAACCCGTGATTGAACTGGAAGGG
GCTGAAAACCAGATTACCATGTTGCTCCAGCTCCCTGACAAAGGACTGGCGCTGCTGGACGATACGCTGACCCACTGGCA
TACCAACGCACGGTTGCTGCAACAAATGATGAGCTGGTGGCTGAATGCACCTCCGCAAAATAATGATATAACGCTGCCCA
ATACGTTCAGTCAGTCGCTGTACGATGTGCTGATGCATCAGCGAAATCTCGCCTGGCGGGATAAATTACGCGCCATGCCG
CCGGGGCGATATGTGGTCGCGGTCGGTGCACTACACCTGTATGGAGAAGGGAATTTGCCGCAAATGTTGCGCTAA

Upstream 100 bases:

>100_bases
AGAACATACTGAATCATACAAACACATTAAACAAGTCCCCAACTCCATTTGCGCCATCCCTCACCGCGCGCTAGCATGAT
ATTTCACAAAGGGAGGTCGT

Downstream 100 bases:

>100_bases
AAAAATGGCCAATATCGCTATTGGCCCGTCAAAGAGGAATTTCATTTTTTTATTATTATGCCGTCACTTTAAGCGACGGT
GTAACTCGATTGTCGCTCAA

Product: ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MDLLYRVKTLWAALRGNHYTWPAIDITLPGNRHFHLIGSIHMGSHDMTPLPTRLLKKLKNADALIVEADVSTSDTPFANL
PTCEALEERINEEQLQNLQHISQEMGISPSLFSTQPLWQIAMVLQATQAQKLGLRAEYGIDYQLLQAAKQQHKPVIELEG
AENQITMLLQLPDKGLALLDDTLTHWHTNARLLQQMMSWWLNAPPQNNDITLPNTFSQSLYDVLMHQRNLAWRDKLRAMP
PGRYVVAVGALHLYGEGNLPQMLR

Sequences:

>Translated_264_residues
MDLLYRVKTLWAALRGNHYTWPAIDITLPGNRHFHLIGSIHMGSHDMTPLPTRLLKKLKNADALIVEADVSTSDTPFANL
PTCEALEERINEEQLQNLQHISQEMGISPSLFSTQPLWQIAMVLQATQAQKLGLRAEYGIDYQLLQAAKQQHKPVIELEG
AENQITMLLQLPDKGLALLDDTLTHWHTNARLLQQMMSWWLNAPPQNNDITLPNTFSQSLYDVLMHQRNLAWRDKLRAMP
PGRYVVAVGALHLYGEGNLPQMLR
>Mature_264_residues
MDLLYRVKTLWAALRGNHYTWPAIDITLPGNRHFHLIGSIHMGSHDMTPLPTRLLKKLKNADALIVEADVSTSDTPFANL
PTCEALEERINEEQLQNLQHISQEMGISPSLFSTQPLWQIAMVLQATQAQKLGLRAEYGIDYQLLQAAKQQHKPVIELEG
AENQITMLLQLPDKGLALLDDTLTHWHTNARLLQQMMSWWLNAPPQNNDITLPNTFSQSLYDVLMHQRNLAWRDKLRAMP
PGRYVVAVGALHLYGEGNLPQMLR

Specific function: Unknown

COG id: COG3735

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786689, Length=264, Percent_Identity=98.4848484848485, Blast_Score=535, Evalue=1e-153,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010891 [H]

Pfam domain/function: PF07446 GumN [H]

EC number: NA

Molecular weight: Translated: 30020; Mature: 30020

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLLYRVKTLWAALRGNHYTWPAIDITLPGNRHFHLIGSIHMGSHDMTPLPTRLLKKLKN
CCHHHHHHHHHHHHCCCCEECCEEEEEECCCCEEEEEEEEEECCCCCCCCHHHHHHHHCC
ADALIVEADVSTSDTPFANLPTCEALEERINEEQLQNLQHISQEMGISPSLFSTQPLWQI
CCEEEEEECCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
AMVLQATQAQKLGLRAEYGIDYQLLQAAKQQHKPVIELEGAENQITMLLQLPDKGLALLD
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCEEEEEEECCCCCCHHHH
DTLTHWHTNARLLQQMMSWWLNAPPQNNDITLPNTFSQSLYDVLMHQRNLAWRDKLRAMP
HHHHHHCCCHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHCCCHHHHHHHCCC
PGRYVVAVGALHLYGEGNLPQMLR
CCCEEEEEEEEEEECCCCCHHHCC
>Mature Secondary Structure
MDLLYRVKTLWAALRGNHYTWPAIDITLPGNRHFHLIGSIHMGSHDMTPLPTRLLKKLKN
CCHHHHHHHHHHHHCCCCEECCEEEEEECCCCEEEEEEEEEECCCCCCCCHHHHHHHHCC
ADALIVEADVSTSDTPFANLPTCEALEERINEEQLQNLQHISQEMGISPSLFSTQPLWQI
CCEEEEEECCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
AMVLQATQAQKLGLRAEYGIDYQLLQAAKQQHKPVIELEGAENQITMLLQLPDKGLALLD
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCEEEEEEECCCCCCHHHH
DTLTHWHTNARLLQQMMSWWLNAPPQNNDITLPNTFSQSLYDVLMHQRNLAWRDKLRAMP
HHHHHHCCCHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHCCCHHHHHHHCCC
PGRYVVAVGALHLYGEGNLPQMLR
CCCEEEEEEEEEEECCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]