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The map label for this gene is ybaO [H]

Identifier: 82542935

GI number: 82542935

Start: 357144

End: 357689

Strand: Direct

Name: ybaO [H]

Synonym: SBO_0341

Alternate gene names: 82542935

Gene position: 357144-357689 (Clockwise)

Preceding gene: 82542934

Following gene: 82542936

Centisome position: 7.9

GC content: 48.9

Gene sequence:

>546_bases
GTGGTGTTTAAACCGCACAGAATAAATTGTCGTGATTTCACCTTTAAAATAGAATTAAAAGAGAAAAAAATTCTCTGTGG
AAGGGCTATGTTAGATAAAATTGACCGTAAGCTGCTGGCCTTACTGCAGCAGGATTGCACCCTCTCTTTGCAGGCACTGG
CTGAAGCCGTTAATCTGACAACCACCCCTTGCTGGAAGCGCCTGAAACGGCTGGAGGACGACGGTATCCTTATCGGCAAA
GTCGCCCTGCTGGATCCGGAAAAAATAGGCCTCGGCCTGACCGCCTTTGTGCTGATAAAAACGCAACATCACAGTAGCGA
ATGGTATTGCCGCTTTGTCACGGTGGTTACCGAAATGCCAGAAGTGCTGGGGTTCTGGCGCATGGCTGGTGAATACGATT
ATCTGATGCGCGTCCAGGTTGCCGACATGAAACGCTACGACGAGTTTTATAAGCGTCTGGTAAACAGCGTGCCGGGGCTG
TCGGACGTCACTTCCAGCTTCGCGATGGAACAGATTAAATACACCACTTCTTTACCCATCGAATAA

Upstream 100 bases:

>100_bases
TGGACTATCCACATCTACCTTATTCCCCCGAATAATGAGATCCCTTCCAGCACCGGGCAATTGCCCGGTTTTTTTTGCGT
TGAATTTGTCATTTTGTGCC

Downstream 100 bases:

>100_bases
ATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAAGCTGGTATTTCCGTCGGGAATGGCGTCGC
TATCTCGGGGCTGTCGCCTT

Product: LRP-like transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MVFKPHRINCRDFTFKIELKEKKILCGRAMLDKIDRKLLALLQQDCTLSLQALAEAVNLTTTPCWKRLKRLEDDGILIGK
VALLDPEKIGLGLTAFVLIKTQHHSSEWYCRFVTVVTEMPEVLGFWRMAGEYDYLMRVQVADMKRYDEFYKRLVNSVPGL
SDVTSSFAMEQIKYTTSLPIE

Sequences:

>Translated_181_residues
MVFKPHRINCRDFTFKIELKEKKILCGRAMLDKIDRKLLALLQQDCTLSLQALAEAVNLTTTPCWKRLKRLEDDGILIGK
VALLDPEKIGLGLTAFVLIKTQHHSSEWYCRFVTVVTEMPEVLGFWRMAGEYDYLMRVQVADMKRYDEFYKRLVNSVPGL
SDVTSSFAMEQIKYTTSLPIE
>Mature_181_residues
MVFKPHRINCRDFTFKIELKEKKILCGRAMLDKIDRKLLALLQQDCTLSLQALAEAVNLTTTPCWKRLKRLEDDGILIGK
VALLDPEKIGLGLTAFVLIKTQHHSSEWYCRFVTVVTEMPEVLGFWRMAGEYDYLMRVQVADMKRYDEFYKRLVNSVPGL
SDVTSSFAMEQIKYTTSLPIE

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=152, Percent_Identity=100, Blast_Score=315, Evalue=2e-87,
Organism=Escherichia coli, GI1787116, Length=151, Percent_Identity=33.112582781457, Blast_Score=97, Evalue=7e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 20942; Mature: 20942

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFKPHRINCRDFTFKIELKEKKILCGRAMLDKIDRKLLALLQQDCTLSLQALAEAVNLT
CCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
TTPCWKRLKRLEDDGILIGKVALLDPEKIGLGLTAFVLIKTQHHSSEWYCRFVTVVTEMP
CCHHHHHHHHCCCCCEEEEEEEEECHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHH
EVLGFWRMAGEYDYLMRVQVADMKRYDEFYKRLVNSVPGLSDVTSSFAMEQIKYTTSLPI
HHHHHHHHCCCCCHHEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC
E
C
>Mature Secondary Structure
MVFKPHRINCRDFTFKIELKEKKILCGRAMLDKIDRKLLALLQQDCTLSLQALAEAVNLT
CCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
TTPCWKRLKRLEDDGILIGKVALLDPEKIGLGLTAFVLIKTQHHSSEWYCRFVTVVTEMP
CCHHHHHHHHCCCCCEEEEEEEEECHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHH
EVLGFWRMAGEYDYLMRVQVADMKRYDEFYKRLVNSVPGLSDVTSSFAMEQIKYTTSLPI
HHHHHHHHCCCCCHHEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]