Click here to switch to the map view.

The map label for this gene is rtcB [C]

Identifier: 82542838

GI number: 82542838

Start: 257263

End: 257832

Strand: Direct

Name: rtcB [C]

Synonym: SBO_0241

Alternate gene names: 82542838

Gene position: 257263-257832 (Clockwise)

Preceding gene: 82542836

Following gene: 82542839

Centisome position: 5.69

GC content: 52.98

Gene sequence:

>570_bases
TTGCCTCAAGGCAGTGACGACGCGCTACGGTATATTGCGGAACATGACGATGCGCTGGCGTTTGCGTGTATTAATCGCCA
GATGATCGCTTTGCGCATAATGCAACAAGTTAAGGCCACGGGAAGTCCGGTTCTGGATGTGGCGCATAACTTTGTTAGCG
CGTGTCAAATCGGCGATCAACAGGGCTGGTTGCATCGTAAAGGTGCCACGCCGGATGACAACGGTCTGGTGATTATTCCC
GGTTCACGTGGTGATTACTCCTGGATTGTACAGCCTGTTGCGAACGAAAAAACGCTCCACTCGCTGGCGCATGGGGCAGG
GCGTAAATGGGGGCGCACCGAGTGTAAATGGCGTCTGGCAGCGAAATACACGGTGACGCAACTCTCGCGGACTGAACTTG
GCAGTCGGATAATTTGTCGCGATAAACAACTCATCTTTGAAGAAGCGCCACAAGCCTATAAATCGGCTGAAAGCGTGGTG
CAATGTCTGGTGCAGGCCGGTTTAATTATTCCTGTCGCGCGGCTGCGTCCGGTGCTAACGCTCAAAAACAGTGGAGGGAA
AAAAGGATGA

Upstream 100 bases:

>100_bases
GCCGGGTCTGGCTGGCTAACACCCCATTATAAGGGGTACGAATAAAGTAACGGGGCAGTCTATTTTACAGCGGCATATTG
CCTCGTTCTCGCATCATGGT

Downstream 100 bases:

>100_bases
TCTTGCTACAACTCTCCTCAGCGCAGGGGCCGGAAGAATGTTGTCTCGCAGTGAAAAAGGCGCTGGACAGGCTAATTAAA
GAAGCTGCCCGACAAGACGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MPQGSDDALRYIAEHDDALAFACINRQMIALRIMQQVKATGSPVLDVAHNFVSACQIGDQQGWLHRKGATPDDNGLVIIP
GSRGDYSWIVQPVANEKTLHSLAHGAGRKWGRTECKWRLAAKYTVTQLSRTELGSRIICRDKQLIFEEAPQAYKSAESVV
QCLVQAGLIIPVARLRPVLTLKNSGGKKG

Sequences:

>Translated_189_residues
MPQGSDDALRYIAEHDDALAFACINRQMIALRIMQQVKATGSPVLDVAHNFVSACQIGDQQGWLHRKGATPDDNGLVIIP
GSRGDYSWIVQPVANEKTLHSLAHGAGRKWGRTECKWRLAAKYTVTQLSRTELGSRIICRDKQLIFEEAPQAYKSAESVV
QCLVQAGLIIPVARLRPVLTLKNSGGKKG
>Mature_188_residues
PQGSDDALRYIAEHDDALAFACINRQMIALRIMQQVKATGSPVLDVAHNFVSACQIGDQQGWLHRKGATPDDNGLVIIPG
SRGDYSWIVQPVANEKTLHSLAHGAGRKWGRTECKWRLAAKYTVTQLSRTELGSRIICRDKQLIFEEAPQAYKSAESVVQ
CLVQAGLIIPVARLRPVLTLKNSGGKKG

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Escherichia coli, GI2367224, Length=189, Percent_Identity=29.6296296296296, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 20745; Mature: 20614

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQGSDDALRYIAEHDDALAFACINRQMIALRIMQQVKATGSPVLDVAHNFVSACQIGDQ
CCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
QGWLHRKGATPDDNGLVIIPGSRGDYSWIVQPVANEKTLHSLAHGAGRKWGRTECKWRLA
CCCEECCCCCCCCCCEEEEECCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEEE
AKYTVTQLSRTELGSRIICRDKQLIFEEAPQAYKSAESVVQCLVQAGLIIPVARLRPVLT
HHHHHHHHHHHHHCCEEEECCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHCEEEE
LKNSGGKKG
EECCCCCCC
>Mature Secondary Structure 
PQGSDDALRYIAEHDDALAFACINRQMIALRIMQQVKATGSPVLDVAHNFVSACQIGDQ
CCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
QGWLHRKGATPDDNGLVIIPGSRGDYSWIVQPVANEKTLHSLAHGAGRKWGRTECKWRLA
CCCEECCCCCCCCCCEEEEECCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEEE
AKYTVTQLSRTELGSRIICRDKQLIFEEAPQAYKSAESVVQCLVQAGLIIPVARLRPVLT
HHHHHHHHHHHHHCCEEEECCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHCEEEE
LKNSGGKKG
EECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14566062 [H]