| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
Click here to switch to the map view.
The map label for this gene is 82542836
Identifier: 82542836
GI number: 82542836
Start: 255428
End: 255811
Strand: Direct
Name: 82542836
Synonym: SBO_0239
Alternate gene names: NA
Gene position: 255428-255811 (Clockwise)
Preceding gene: 82542835
Following gene: 82542838
Centisome position: 5.65
GC content: 50.26
Gene sequence:
>384_bases TTGACGCTTACTTTTTATCCGGCACTGGTCGGCAATGATATCGGCTGCGGTATGGCGCTATGGCAAACAGATATTCTCGC TCGCAAATACAACGCCGATAAGTTTGAAAAGCGATTATCAGATCTGGATGACGTTGCTGAAGAAAGCTGGCTGGAGGAAA ACCTGCCGTCAGCATTTGCACAGCATCCGTGGTGCAGCTCGCTTGGCTCTATCGGTGGCGGCAATCATTTCGCTGAACTG CAACAAGTTGATCAAATCATCAACGCTGAACTGTTTGCACTAGCAGGTCTGGATGCACAACATCTGCAACTGTTGGTTCA TAGCGGCTCGCGGGGGGGGCCCCTATTAAGTTGTCAAGCATGTTATGACCCCTGCGGGGTATAA
Upstream 100 bases:
>100_bases ATCCTGAGCGTACTGCCGGAATGGCCTTCCAACCGTGTTGACGAACTCCTGCCATGGAACGTAGCACTCACCAATAAATA AGCGTCAATACGGTGCTCCG
Downstream 100 bases:
>100_bases AAAGTCCCGTCGCGCATCATGGCGAACAGAACGTCGCAGCGTCGTCTCGCCAGGGCGATAAGCGCCTGATTGTGTCGTTT TCCCTGACTCATTTTGCGGG
Product: hypothetical protein
Products: NA
Alternate protein names: Release Factor H-Coupled Rctb Family Protein; RtcB Protein
Number of amino acids: Translated: 127; Mature: 126
Protein sequence:
>127_residues MTLTFYPALVGNDIGCGMALWQTDILARKYNADKFEKRLSDLDDVAEESWLEENLPSAFAQHPWCSSLGSIGGGNHFAEL QQVDQIINAELFALAGLDAQHLQLLVHSGSRGGPLLSCQACYDPCGV
Sequences:
>Translated_127_residues MTLTFYPALVGNDIGCGMALWQTDILARKYNADKFEKRLSDLDDVAEESWLEENLPSAFAQHPWCSSLGSIGGGNHFAEL QQVDQIINAELFALAGLDAQHLQLLVHSGSRGGPLLSCQACYDPCGV >Mature_126_residues TLTFYPALVGNDIGCGMALWQTDILARKYNADKFEKRLSDLDDVAEESWLEENLPSAFAQHPWCSSLGSIGGGNHFAELQ QVDQIINAELFALAGLDAQHLQLLVHSGSRGGPLLSCQACYDPCGV
Specific function: Unknown
COG id: COG1690
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13797; Mature: 13665
Theoretical pI: Translated: 4.23; Mature: 4.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 4.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLTFYPALVGNDIGCGMALWQTDILARKYNADKFEKRLSDLDDVAEESWLEENLPSAFA CEEEECHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHH QHPWCSSLGSIGGGNHFAELQQVDQIINAELFALAGLDAQHLQLLVHSGSRGGPLLSCQA CCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEHHC CYDPCGV CCCCCCC >Mature Secondary Structure TLTFYPALVGNDIGCGMALWQTDILARKYNADKFEKRLSDLDDVAEESWLEENLPSAFA EEEECHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHH QHPWCSSLGSIGGGNHFAELQQVDQIINAELFALAGLDAQHLQLLVHSGSRGGPLLSCQA CCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEHHC CYDPCGV CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA