| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is yaeF [H]
Identifier: 82542792
GI number: 82542792
Start: 202163
End: 202780
Strand: Reverse
Name: yaeF [H]
Synonym: SBO_0182
Alternate gene names: 82542792
Gene position: 202780-202163 (Counterclockwise)
Preceding gene: 82542793
Following gene: 82542788
Centisome position: 4.49
GC content: 49.19
Gene sequence:
>618_bases TTGCTGTTCTCCTCAAGCCTTGGGGTAACCTCATTTGGAATCCGCGTCTTCAGCACTTCCTCTGTGAGTCACGTTGCAAT CTTTCTGGGTGATAATAACGTTGCAGAAGCGACAGGCGCTGGCGTCCAGATTGTTTCCCTTAAAAAAGCGATGAAGCATA GTGATAAGCTTTTCGTCTTACGAGTCCCGGATCTTACCCCGCAACAAGCCACAGATATCACCGCGTTTGCCAATAAAATC AAAGATAGCGGTTATAACTATCGCGGCATTGTCGAATTTATTCCCTTTATGGTGACTCGCCAGATGTGCTCACTGAATCA GTTCTCCGAGGATTTTCGCCAGCAGTGCGTCAGCGGCCTGGCGAAAGCGCAGTTAAGCAGTGTGGGCGAAGGAGACAAAA AGTCGTGGTTTTGTTCGGAATTTGTCACTGATGCATTTGCCAAAGCCGGACATCCACTTACACTGGCGCAATCGGGCTGG ATTAGCCCTGCCGATCTGATGCATATGCGTATTGGTGATGTCTCTGCGTTTAAGCCAGAAACGCAGTTACAGTATGTTGG GCACCTGAAGCCAGGGATTTATATCAAGGCGGGTCGCTTTGTTGGTTTGACCCGGTGA
Upstream 100 bases:
>100_bases TGCCGAGGCAAAAACATGGGCTGTCAAATTCCAGCATCAAAGCTCTTTCACCGAACAATCAATAAAAGAAATAACGGCAC CTGATCTCAAACCCGGCGAT
Downstream 100 bases:
>100_bases TAAAGTAAATGCCTTATCCGCCTTAAGGTATGAGGGGGGTTGTAGGCATGATAAGACGCGCCAGCGTCGCATCAGGCGTT GAGCACCATTGCCGGATGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 205; Mature: 205
Protein sequence:
>205_residues MLFSSSLGVTSFGIRVFSTSSVSHVAIFLGDNNVAEATGAGVQIVSLKKAMKHSDKLFVLRVPDLTPQQATDITAFANKI KDSGYNYRGIVEFIPFMVTRQMCSLNQFSEDFRQQCVSGLAKAQLSSVGEGDKKSWFCSEFVTDAFAKAGHPLTLAQSGW ISPADLMHMRIGDVSAFKPETQLQYVGHLKPGIYIKAGRFVGLTR
Sequences:
>Translated_205_residues MLFSSSLGVTSFGIRVFSTSSVSHVAIFLGDNNVAEATGAGVQIVSLKKAMKHSDKLFVLRVPDLTPQQATDITAFANKI KDSGYNYRGIVEFIPFMVTRQMCSLNQFSEDFRQQCVSGLAKAQLSSVGEGDKKSWFCSEFVTDAFAKAGHPLTLAQSGW ISPADLMHMRIGDVSAFKPETQLQYVGHLKPGIYIKAGRFVGLTR >Mature_205_residues MLFSSSLGVTSFGIRVFSTSSVSHVAIFLGDNNVAEATGAGVQIVSLKKAMKHSDKLFVLRVPDLTPQQATDITAFANKI KDSGYNYRGIVEFIPFMVTRQMCSLNQFSEDFRQQCVSGLAKAQLSSVGEGDKKSWFCSEFVTDAFAKAGHPLTLAQSGW ISPADLMHMRIGDVSAFKPETQLQYVGHLKPGIYIKAGRFVGLTR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87081699, Length=205, Percent_Identity=99.0243902439024, Blast_Score=421, Evalue=1e-119,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22394; Mature: 22394
Theoretical pI: Translated: 9.49; Mature: 9.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLFSSSLGVTSFGIRVFSTSSVSHVAIFLGDNNVAEATGAGVQIVSLKKAMKHSDKLFVL CCCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEEEHHHHHHCCCCCEEEE RVPDLTPQQATDITAFANKIKDSGYNYRGIVEFIPFMVTRQMCSLNQFSEDFRQQCVSGL ECCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AKAQLSSVGEGDKKSWFCSEFVTDAFAKAGHPLTLAQSGWISPADLMHMRIGDVSAFKPE HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCC TQLQYVGHLKPGIYIKAGRFVGLTR HHHHHHCCCCCCEEEECCCEEECCC >Mature Secondary Structure MLFSSSLGVTSFGIRVFSTSSVSHVAIFLGDNNVAEATGAGVQIVSLKKAMKHSDKLFVL CCCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEEEHHHHHHCCCCCEEEE RVPDLTPQQATDITAFANKIKDSGYNYRGIVEFIPFMVTRQMCSLNQFSEDFRQQCVSGL ECCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AKAQLSSVGEGDKKSWFCSEFVTDAFAKAGHPLTLAQSGWISPADLMHMRIGDVSAFKPE HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCC TQLQYVGHLKPGIYIKAGRFVGLTR HHHHHHCCCCCCEEEECCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7635807; 9278503; 2203971; 1688424; 7635808 [H]