Click here to switch to the map view.

The map label for this gene is yaeJ [H]

Identifier: 82542790

GI number: 82542790

Start: 200817

End: 201239

Strand: Direct

Name: yaeJ [H]

Synonym: SBO_0180

Alternate gene names: 82542790

Gene position: 200817-201239 (Clockwise)

Preceding gene: 82542789

Following gene: 82542791

Centisome position: 4.44

GC content: 55.08

Gene sequence:

>423_bases
ATGATTGTGATTTCCCGACATGTTGCTATTCCCGATGGTGAGCTTGAGATCACCGCCATTCGTGCGCAGGGCGCGGGCGG
GCAGCATGTTAATAAGACCTCAACGGCCATTCATCTGCGTTTTGACATTCGGGCGTCCAGCCTGCCAGAGTATTACAAAG
AGCGTCTGCTCGCCGCCAGCCATCATTTGATCAGCAGTGATGGCGTGATTGTCATTAAGGCACAGGAATACCGCAGTCAG
GAACTGAACCGCGAAGCCGCGCTAGCCCGGCTGGTGGCAGTGATTAAAGATTTAACAACAGAACAAAAAGCCCGACGACC
CACGCGGCCCACCCGTGCATCGAAAGAGCGCAGGCTGGCATCGAAAGCACAAAAATCAAGCGCGAAGGCGATGCGCGGCA
AAGTACGCAGCGGTCGGGAATAA

Upstream 100 bases:

>100_bases
GTACCATGACGCTGCAGGCAACGATTCAGGATGGCGTGATCTGGTTATCGGACGATAAGAATAATCTGGAAGTTAACTTA
ACCGCCTGGCAACAACCTTC

Downstream 100 bases:

>100_bases
AAAGAAGGAATAGATGGTGAAAAAAGCGATAGTGACAGCGATGGCTGTAATCAGCCTCTTTACTCTGATGGGATGTAATA
ACCGGGCCGAAGTCGATACG

Product: peptidyl-tRNA hydrolase domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MIVISRHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQ
ELNREAALARLVAVIKDLTTEQKARRPTRPTRASKERRLASKAQKSSAKAMRGKVRSGRE

Sequences:

>Translated_140_residues
MIVISRHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQ
ELNREAALARLVAVIKDLTTEQKARRPTRPTRASKERRLASKAQKSSAKAMRGKVRSGRE
>Mature_140_residues
MIVISRHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQ
ELNREAALARLVAVIKDLTTEQKARRPTRPTRASKERRLASKAQKSSAKAMRGKVRSGRE

Specific function: Unknown

COG id: COG1186

COG function: function code J; Protein chain release factor B

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prokaryotic/mitochondrial release factor family [H]

Homologues:

Organism=Escherichia coli, GI1786389, Length=140, Percent_Identity=97.1428571428571, Blast_Score=272, Evalue=5e-75,
Organism=Drosophila melanogaster, GI19921098, Length=109, Percent_Identity=36.697247706422, Blast_Score=69, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000352 [H]

Pfam domain/function: PF00472 RF-1 [H]

EC number: NA

Molecular weight: Translated: 15549; Mature: 15549

Theoretical pI: Translated: 11.39; Mature: 11.39

Prosite motif: PS00745 RF_PROK_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVISRHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAAS
CEEEECEEECCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHH
HHLISSDGVIVIKAQEYRSQELNREAALARLVAVIKDLTTEQKARRPTRPTRASKERRLA
HHEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
SKAQKSSAKAMRGKVRSGRE
HHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIVISRHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAAS
CEEEECEEECCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHH
HHLISSDGVIVIKAQEYRSQELNREAALARLVAVIKDLTTEQKARRPTRPTRASKERRLA
HHEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
SKAQKSSAKAMRGKVRSGRE
HHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7635807; 9278503; 7635808 [H]