| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is sfsA [H]
Identifier: 82542746
GI number: 82542746
Start: 147001
End: 147705
Strand: Reverse
Name: sfsA [H]
Synonym: SBO_0135
Alternate gene names: 82542746
Gene position: 147705-147001 (Counterclockwise)
Preceding gene: 82542747
Following gene: 82542745
Centisome position: 3.27
GC content: 49.08
Gene sequence:
>705_bases ATGGAATTCTCTCCCCTTCTACAGCGCGCGACGCTAATTCAGCGTTACAAACGTTTTTTAGCCGATGTGATCACACCCGA TGGTCGCGAATTAACGCTACACTGCCCGAATACGGGTGCGATGACCGGTTGTGCAACGCGTGGCGATACCGTCTGGTATT CGACTTCAGACAACACCAAACGGAAATACCCACACACCTGGGAACTAACTCAAAGCCAGAGCGGCGCATTTATTTGCGTC AATACGCTTTGGGCTAACAGGTTGACGAAAGAGGCTATCCTTAATGAATCAATTTCAGAACTGTCAGGCTATAGCTCGCT GAAAAGCGAAGTAAAATATGGCGCAGAACGCAGCCGTATTGACTTTATGTTGCAGGCGGATTCGCGTCCAGACTGCTATA TTGAAGTGAAATCGGTTACGTTAGCGGAGAACGAACAGGGATATTTTCCCGATGCGGTCACTGAACGAGGTCAGAAACAC CTTCGGGAGTTGATGAACGTAGCGGCTGAAGGCCAGCGTGCGGTTATCTTTTTCGCCGTGCTGCATTCAGCCATTACACG GTTTTCACCCGCGCGCCACATCGATGAGAAATACGCGCAACTATTGTCAGAAGCTCAACAGAGGGGGGTAGAAATTCTGG CTTACAAAGCGGAAATTTCTGCTGAAGGCATGGCTCTTAAAAAATCACTGCCGGTTACATTGTAG
Upstream 100 bases:
>100_bases TGACGGAGTTCACCCTTTACGCCTCCTCGTTTGCCCGTGGACGCACACGCTACACGCCGCTAAAACGCTGGGCGCTAATG CAATAACAAGGATTGTCGCA
Downstream 100 bases:
>100_bases TAAAGTAAGTAACTGGTTAATTTACATTCTGGTCGCGTGCGCAAATACGCTTTTCCTCACACAGTTGTCAAGTGTTACGT TTAGATAATTGCTATCCGGA
Product: sugar fermentation stimulation protein A
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 234; Mature: 234
Protein sequence:
>234_residues MEFSPLLQRATLIQRYKRFLADVITPDGRELTLHCPNTGAMTGCATRGDTVWYSTSDNTKRKYPHTWELTQSQSGAFICV NTLWANRLTKEAILNESISELSGYSSLKSEVKYGAERSRIDFMLQADSRPDCYIEVKSVTLAENEQGYFPDAVTERGQKH LRELMNVAAEGQRAVIFFAVLHSAITRFSPARHIDEKYAQLLSEAQQRGVEILAYKAEISAEGMALKKSLPVTL
Sequences:
>Translated_234_residues MEFSPLLQRATLIQRYKRFLADVITPDGRELTLHCPNTGAMTGCATRGDTVWYSTSDNTKRKYPHTWELTQSQSGAFICV NTLWANRLTKEAILNESISELSGYSSLKSEVKYGAERSRIDFMLQADSRPDCYIEVKSVTLAENEQGYFPDAVTERGQKH LRELMNVAAEGQRAVIFFAVLHSAITRFSPARHIDEKYAQLLSEAQQRGVEILAYKAEISAEGMALKKSLPVTL >Mature_234_residues MEFSPLLQRATLIQRYKRFLADVITPDGRELTLHCPNTGAMTGCATRGDTVWYSTSDNTKRKYPHTWELTQSQSGAFICV NTLWANRLTKEAILNESISELSGYSSLKSEVKYGAERSRIDFMLQADSRPDCYIEVKSVTLAENEQGYFPDAVTERGQKH LRELMNVAAEGQRAVIFFAVLHSAITRFSPARHIDEKYAQLLSEAQQRGVEILAYKAEISAEGMALKKSLPVTL
Specific function: Probable regulatory factor involved in maltose metabolism [H]
COG id: COG1489
COG function: function code R; DNA-binding protein, stimulates sugar fermentation
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sfsA family [H]
Homologues:
Organism=Escherichia coli, GI1786340, Length=234, Percent_Identity=98.7179487179487, Blast_Score=482, Evalue=1e-137,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005224 [H]
Pfam domain/function: PF03749 SfsA [H]
EC number: NA
Molecular weight: Translated: 26331; Mature: 26331
Theoretical pI: Translated: 7.50; Mature: 7.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEFSPLLQRATLIQRYKRFLADVITPDGRELTLHCPNTGAMTGCATRGDTVWYSTSDNTK CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCC RKYPHTWELTQSQSGAFICVNTLWANRLTKEAILNESISELSGYSSLKSEVKYGAERSRI CCCCCEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE DFMLQADSRPDCYIEVKSVTLAENEQGYFPDAVTERGQKHLRELMNVAAEGQRAVIFFAV EEEEECCCCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH LHSAITRFSPARHIDEKYAQLLSEAQQRGVEILAYKAEISAEGMALKKSLPVTL HHHHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCEEHHCCCCCCC >Mature Secondary Structure MEFSPLLQRATLIQRYKRFLADVITPDGRELTLHCPNTGAMTGCATRGDTVWYSTSDNTK CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCC RKYPHTWELTQSQSGAFICVNTLWANRLTKEAILNESISELSGYSSLKSEVKYGAERSRI CCCCCEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE DFMLQADSRPDCYIEVKSVTLAENEQGYFPDAVTERGQKHLRELMNVAAEGQRAVIFFAV EEEEECCCCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH LHSAITRFSPARHIDEKYAQLLSEAQQRGVEILAYKAEISAEGMALKKSLPVTL HHHHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCEEHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA