| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
Click here to switch to the map view.
The map label for this gene is 82542700
Identifier: 82542700
GI number: 82542700
Start: 93269
End: 94567
Strand: Reverse
Name: 82542700
Synonym: SBO_0084
Alternate gene names: NA
Gene position: 94567-93269 (Counterclockwise)
Preceding gene: 82542704
Following gene: 82542679
Centisome position: 2.09
GC content: 53.19
Gene sequence:
>1299_bases TTGATCATCGTATTATCTCGCCAAATTACCTATCCAACCGAAGTGTACTATACATTCGGCGGGCCAGTTTACCACAAAGA GCCTCGAAACCCAAATTCCAGTCAATTCTTAATCAGCTTGCTTACGTACGAATGCTGGGATATCCAGATAATCCGGCTCT TTCGCAGTTTGCGGCGCATTGTCATTCACTACTTTAGCGACCGGCTTCTGCTCCTGGGTCAGCGGAGCCATCCCATGCTG CTGGTAGCGATCCATCACTGGCTGCTGAACCTGCTTATTGGTCACCAGAGTGATTTCAGGACGTTTGTCCATGCCGATCC CTGTCGCAACAACGGTTACGCGCAGCTCGTCATTCATATCCGGGTCAAGAGAAGTACCGATAACCACAGTCGCGTTGCCG GAAGCAAATGCACGGATGGTGTTACCTACCGTTTCGACCTCAACCAGACCCAGGTCGAAGCCCGCCGTGATGTTAACCAG CACGCCGCGCGCGCCAGACAGGTCGATATCTTCCAGCAGCGGAGAAGAGATAGCCATTTCAGCAGCTTCTTCCGCACGGT TTTCACCGCTCGCCACGCCAGAACCCATCATTGCGTAGCCCATTTCAGACATTACGGTGCGTACGTCTGCAAAGTCCACG TTCATCAAACCCGGACGAGTAATCAGTTCGGCGATACCTTGCACAGCGCCTTTCAGTACATCGTTCGCTGCGCCAAACGC ATCCAGCAGGGAGATACCGCGGCCCAGAACTTTCAGCAGTTTGTCGTTCGGGATAGTGATCAGAGAGTCCACATGCTTGG ACAGTTCAGTGATCCCCTGCTCGGCGAATGCCATACGCTTCTTGCCTTCAAAGTTGAAAGGCTTAGTGACGACAGCAACG GTCAGGATACCCAAATCTTTTGCCACTTCAGCGACGACTGGTGCTGCACCTGTACCGGTACCACCACCCATACCCGCAGC AATAAAGACCATGTCTGCACCTTCCAGCGCCGCACGCAATGCATCGCGATCCTCATCAGCCGCATTGCGGCCAACTTCTG GATTAGCGCCAGCGCCCAGTCCTTTGGTGATACCGCTACCGATTTGAATCGTCTGTCCAACCGCTGTTTTACGCAGCGCT TGTGCATCGGTATTTACCGCGAAGAATTCAACACCTTCAATACGCTCGCGCACCATGTGTTCAACAGCATTACCGCCGCC GCCGCCGACGCCGATGACTTTAATCACCGCGTCATTGGTAAGTTCCATTGGTTCAAACATAGTTTCTCTCCGATTTGTGC CTGTCGCCTGAGTCCGTAA
Upstream 100 bases:
>100_bases CCCGGTGTTGGCCGGCGCAGGGCGTAACGTCAGAGTGACTTTCTTGCCGGTATGTAAACCGACACCCGTCGCCTGAACGA TACGTTTAAGTGTCCTTTGT
Downstream 100 bases:
>100_bases TCATCGTCGGCCTCATAAAAATTAAAACTCTTTTCGCAGCCAACTATTGAGTCGCTTGATCCACGAGCCAACTGATGCTG TAACACGTTTTTCTACTTCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 432; Mature: 432
Protein sequence:
>432_residues MIIVLSRQITYPTEVYYTFGGPVYHKEPRNPNSSQFLISLLTYECWDIQIIRLFRSLRRIVIHYFSDRLLLLGQRSHPML LVAIHHWLLNLLIGHQSDFRTFVHADPCRNNGYAQLVIHIRVKRSTDNHSRVAGSKCTDGVTYRFDLNQTQVEARRDVNQ HAARARQVDIFQQRRRDSHFSSFFRTVFTARHARTHHCVAHFRHYGAYVCKVHVHQTRTSNQFGDTLHSAFQYIVRCAKR IQQGDTAAQNFQQFVVRDSDQRVHMLGQFSDPLLGECHTLLAFKVERLSDDSNGQDTQIFCHFSDDWCCTCTGTTTHTRS NKDHVCTFQRRTQCIAILISRIAANFWISASAQSFGDTATDLNRLSNRCFTQRLCIGIYREEFNTFNTLAHHVFNSITAA AADADDFNHRVIGKFHWFKHSFSPICACRLSP
Sequences:
>Translated_432_residues MIIVLSRQITYPTEVYYTFGGPVYHKEPRNPNSSQFLISLLTYECWDIQIIRLFRSLRRIVIHYFSDRLLLLGQRSHPML LVAIHHWLLNLLIGHQSDFRTFVHADPCRNNGYAQLVIHIRVKRSTDNHSRVAGSKCTDGVTYRFDLNQTQVEARRDVNQ HAARARQVDIFQQRRRDSHFSSFFRTVFTARHARTHHCVAHFRHYGAYVCKVHVHQTRTSNQFGDTLHSAFQYIVRCAKR IQQGDTAAQNFQQFVVRDSDQRVHMLGQFSDPLLGECHTLLAFKVERLSDDSNGQDTQIFCHFSDDWCCTCTGTTTHTRS NKDHVCTFQRRTQCIAILISRIAANFWISASAQSFGDTATDLNRLSNRCFTQRLCIGIYREEFNTFNTLAHHVFNSITAA AADADDFNHRVIGKFHWFKHSFSPICACRLSP >Mature_432_residues MIIVLSRQITYPTEVYYTFGGPVYHKEPRNPNSSQFLISLLTYECWDIQIIRLFRSLRRIVIHYFSDRLLLLGQRSHPML LVAIHHWLLNLLIGHQSDFRTFVHADPCRNNGYAQLVIHIRVKRSTDNHSRVAGSKCTDGVTYRFDLNQTQVEARRDVNQ HAARARQVDIFQQRRRDSHFSSFFRTVFTARHARTHHCVAHFRHYGAYVCKVHVHQTRTSNQFGDTLHSAFQYIVRCAKR IQQGDTAAQNFQQFVVRDSDQRVHMLGQFSDPLLGECHTLLAFKVERLSDDSNGQDTQIFCHFSDDWCCTCTGTTTHTRS NKDHVCTFQRRTQCIAILISRIAANFWISASAQSFGDTATDLNRLSNRCFTQRLCIGIYREEFNTFNTLAHHVFNSITAA AADADDFNHRVIGKFHWFKHSFSPICACRLSP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50131; Mature: 50131
Theoretical pI: Translated: 9.15; Mature: 9.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.9 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 3.9 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIIVLSRQITYPTEVYYTFGGPVYHKEPRNPNSSQFLISLLTYECWDIQIIRLFRSLRRI CEEEEECCCCCCEEEEEECCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH VIHYFSDRLLLLGQRSHPMLLVAIHHWLLNLLIGHQSDFRTFVHADPCRNNGYAQLVIHI HHHHHCCCEEEEECCCCCEEHHHHHHHHHHHHHCCCCHHCEEEECCCCCCCCEEEEEEEE RVKRSTDNHSRVAGSKCTDGVTYRFDLNQTQVEARRDVNQHAARARQVDIFQQRRRDSHF EEECCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH SSFFRTVFTARHARTHHCVAHFRHYGAYVCKVHVHQTRTSNQFGDTLHSAFQYIVRCAKR HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH IQQGDTAAQNFQQFVVRDSDQRVHMLGQFSDPLLGECHTLLAFKVERLSDDSNGQDTQIF HHCCCHHHHHHHHHHHCCCCCCEEEHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEE CHFSDDWCCTCTGTTTHTRSNKDHVCTFQRRTQCIAILISRIAANFWISASAQSFGDTAT EEECCCEEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHEEECCCHHCCCHHH DLNRLSNRCFTQRLCIGIYREEFNTFNTLAHHVFNSITAAAADADDFNHRVIGKFHWFKH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHC SFSPICACRLSP CCCCEEEEECCC >Mature Secondary Structure MIIVLSRQITYPTEVYYTFGGPVYHKEPRNPNSSQFLISLLTYECWDIQIIRLFRSLRRI CEEEEECCCCCCEEEEEECCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH VIHYFSDRLLLLGQRSHPMLLVAIHHWLLNLLIGHQSDFRTFVHADPCRNNGYAQLVIHI HHHHHCCCEEEEECCCCCEEHHHHHHHHHHHHHCCCCHHCEEEECCCCCCCCEEEEEEEE RVKRSTDNHSRVAGSKCTDGVTYRFDLNQTQVEARRDVNQHAARARQVDIFQQRRRDSHF EEECCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH SSFFRTVFTARHARTHHCVAHFRHYGAYVCKVHVHQTRTSNQFGDTLHSAFQYIVRCAKR HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH IQQGDTAAQNFQQFVVRDSDQRVHMLGQFSDPLLGECHTLLAFKVERLSDDSNGQDTQIF HHCCCHHHHHHHHHHHCCCCCCEEEHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEE CHFSDDWCCTCTGTTTHTRSNKDHVCTFQRRTQCIAILISRIAANFWISASAQSFGDTAT EEECCCEEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHEEECCCHHCCCHHH DLNRLSNRCFTQRLCIGIYREEFNTFNTLAHHVFNSITAAAADADDFNHRVIGKFHWFKH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHC SFSPICACRLSP CCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA