Click here to switch to the map view.

The map label for this gene is lpxC [H]

Identifier: 82542699

GI number: 82542699

Start: 94560

End: 95477

Strand: Direct

Name: lpxC [H]

Synonym: SBO_0083

Alternate gene names: 82542699

Gene position: 94560-95477 (Clockwise)

Preceding gene: 82542698

Following gene: 161984992

Centisome position: 2.09

GC content: 50.76

Gene sequence:

>918_bases
ATGATCAAACAAAGGACACTTAAACGTATCGTTCAGGCGACGGGTGTCGGTTTACATACCGGCAAGAAAGTCACTCTGAC
GTTACGCCCTGCGCCGGCCAACACCGGGGTCATCTATCGTCGCACCGACTTGAATCCACCGGTAGATTTCCCGGCCGATG
CCAAATCTGTGCGTGATACCATGCTCTGTACGTGTCTGGTCAACGAGCATGATGTACGGATTTCAACCGTAGAGCACCTC
AATGCTGCTCTCGCGGGCCTGGGCATCGATAACATTGTTATCGAAGTTAACGCGCCGGAAATCCCGATCATGGACGGCAG
CGCCGCTCCGTTTGTATACCTGCTGCTTGACGCCGGTATCGACGAGTTGAACTGCGCCAAAAAATTTGTTCGCATCAAAG
AGACTGTTCGTGTCGAAGATGGCGATAAGTGGGCTGAATTTAAGCCGTACAATGGTTTTTCGCTGGATTTCACCATCGAT
TTTAACCATCCGGCTATTGATTCCAGCAACCAGCGCTATGCGATGAACTTCTCCGCTGATGCGTTTATGCGCCAGATCAG
CCGTGCGCGTACGTTCGGTTTCATGCGTGATATCGAATATCTGCAGTCCCGTGGTTTGTGCCTGGGCGGCAGCTTCGATT
GTGCCATCGTTGTTGACGATTATCGCGTACTGAACGAAGACGGCCTGCGTTTTGAAGACGAATTTGTGCGTCACAAAATG
CTCGATGCGATCGGTGACTTGTTCATGTGTGGTCACAATATTATTGGTGCATTTATCGCTTATAAATCCGGTCATGCACT
GAATAACAAACTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCTTGGGAATATGTGACCTTCCAGGACGACGCAGAACTGC
CGTTGACCTTCAAAGCGCCTTCAGCTGTACTGGCATAA

Upstream 100 bases:

>100_bases
GAATTGACTGGAATTTGGGTTTCGAGGCTCTTTGTGGTAAACTGGCCCGCCGAATGTATAGTACACTTCGGTTGGATAGG
TAATTTGGCGAGATAATACG

Downstream 100 bases:

>100_bases
CGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTG
AATTTTATAAGAGCTATAAA

Product: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase

Products: NA

Alternate protein names: UDP-3-O-acyl-GlcNAc deacetylase [H]

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDLNPPVDFPADAKSVRDTMLCTCLVNEHDVRISTVEHL
NAALAGLGIDNIVIEVNAPEIPIMDGSAAPFVYLLLDAGIDELNCAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTID
FNHPAIDSSNQRYAMNFSADAFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVVDDYRVLNEDGLRFEDEFVRHKM
LDAIGDLFMCGHNIIGAFIAYKSGHALNNKLLQAVLAKQEAWEYVTFQDDAELPLTFKAPSAVLA

Sequences:

>Translated_305_residues
MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDLNPPVDFPADAKSVRDTMLCTCLVNEHDVRISTVEHL
NAALAGLGIDNIVIEVNAPEIPIMDGSAAPFVYLLLDAGIDELNCAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTID
FNHPAIDSSNQRYAMNFSADAFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVVDDYRVLNEDGLRFEDEFVRHKM
LDAIGDLFMCGHNIIGAFIAYKSGHALNNKLLQAVLAKQEAWEYVTFQDDAELPLTFKAPSAVLA
>Mature_305_residues
MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDLNPPVDFPADAKSVRDTMLCTCLVNEHDVRISTVEHL
NAALAGLGIDNIVIEVNAPEIPIMDGSAAPFVYLLLDAGIDELNCAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTID
FNHPAIDSSNQRYAMNFSADAFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVVDDYRVLNEDGLRFEDEFVRHKM
LDAIGDLFMCGHNIIGAFIAYKSGHALNNKLLQAVLAKQEAWEYVTFQDDAELPLTFKAPSAVLA

Specific function: Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell [H]

COG id: COG0774

COG function: function code M; UDP-3-O-acyl-N-acetylglucosamine deacetylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lpxC family [H]

Homologues:

Organism=Escherichia coli, GI1786285, Length=305, Percent_Identity=99.344262295082, Blast_Score=629, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020568
- InterPro:   IPR004463
- InterPro:   IPR011334
- InterPro:   IPR015870 [H]

Pfam domain/function: PF03331 LpxC [H]

EC number: 3.5.1.-

Molecular weight: Translated: 33998; Mature: 33998

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDLNPPVDFPADAKSVRDT
CCCHHHHHHHHHHCCCCEECCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCCHHHHHHH
MLCTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVNAPEIPIMDGSAAPFVYLLLDAGI
EEEEEEECCCCEEEEHHHHHHHHHHCCCCCEEEEEECCCCCEEECCCCCCEEEEEECCCC
DELNCAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTIDFNHPAIDSSNQRYAMNFSAD
CHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCHH
AFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVVDDYRVLNEDGLRFEDEFVRHKM
HHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCEEEEEECEEEECCCCCCCHHHHHHHHH
LDAIGDLFMCGHNIIGAFIAYKSGHALNNKLLQAVLAKQEAWEYVTFQDDAELPLTFKAP
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCCEEEECC
SAVLA
HHHCC
>Mature Secondary Structure
MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDLNPPVDFPADAKSVRDT
CCCHHHHHHHHHHCCCCEECCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCCHHHHHHH
MLCTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVNAPEIPIMDGSAAPFVYLLLDAGI
EEEEEEECCCCEEEEHHHHHHHHHHCCCCCEEEEEECCCCCEEECCCCCCEEEEEECCCC
DELNCAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTIDFNHPAIDSSNQRYAMNFSAD
CHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCHH
AFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVVDDYRVLNEDGLRFEDEFVRHKM
HHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCEEEEEECEEEECCCCCCCHHHHHHHHH
LDAIGDLFMCGHNIIGAFIAYKSGHALNNKLLQAVLAKQEAWEYVTFQDDAELPLTFKAP
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCCEEEECC
SAVLA
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on carbon-nitrogen bonds, other than peptide bonds; In linear amides [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA