Click here to switch to the map view.

The map label for this gene is 161984984

Identifier: 161984984

GI number: 161984984

Start: 246357

End: 247118

Strand: Direct

Name: 161984984

Synonym: SBO_0232

Alternate gene names: NA

Gene position: 246357-247118 (Clockwise)

Preceding gene: 82542828

Following gene: 82542830

Centisome position: 5.45

GC content: 56.82

Gene sequence:

>762_bases
ATGGTTAAATCACACGGCACCGTCAGTGTCGACGGTAAAGTCTCTGATGCTGACCTCACTTACCTGGAAGAGGTGGCAAA
CAGCACCGGGCAGGAGGTGGACAAAAGCCGCCTGACATCACAGGCCTTTGCCCGCGCGGCACTGATCACTGATGTGGGTA
TTGCTCTGGCTACGGAACTGGAAACGGCCGGGCAGAAATGGTCTCTGGGCTTCCCCCCCAAATTCCAGCGCGTCGACCTG
TTCAACTACAACGTGCTGGTCAGAAATTATGACAGCAGCGCCTTCAAAGGCGACCGCTACCACAACACGAAAAATGGCAT
CAACGCCGACATCGGTGCCAGTACGAACCTGGATGACAACTGGACGCTGGGACTGGTCGCACAGAACCTGATCCCCCGTA
GTATTGAGACAAAAGAAGTGAACGGTATCACGGAAACCTTCAGGATCCGCCCGCAGGTGACGGCCGGTGTCTCCTGGCAC
AACGCGATGTTCACCACCGCATTTGATGTGGATCTGACCCCGGCCAGCGGTTTCACCTCCGACAGCAACCGTCAGTTTGC
CGCCATTGGCGCAGAATTTAATGCCTGGAAATGGGCACAGCTGCGCGCCGGTTACCGTCAGAATCTGGCCGGTAACGACG
GCAGTGCATTCACGGCCGGGGTGGGGATCTCACCGTTTGATGTGGTTCACCTTGATGTTGCAGGCCTGATCGGCACGGAC
AACACTTACGGTGCGGTCGCACAGTTCCAGTTCACCTTCTGA

Upstream 100 bases:

>100_bases
GAAAGAACACCTCCGGGACTTCCGTAACACACATGCCGCCGCACAGCTGGGCGTTTCTGCTGTGGCGGCCCTTCCCGGTG
ATCGCCTCTCTGCCGCACTG

Downstream 100 bases:

>100_bases
GTTCCACCTGCAAAACAGCATGCACATTATCGCTGCATGTTGTTTCCATCATCAAAAGTCTGTCGGACATCGACAGACTT
AACTCCCCCGGATAATACAG

Product: hypothetical protein

Products: NA

Alternate protein names: Plasmid Transfer Protein TraF; TraF Protein; Outer Membrane Or Exported; Conjugative Transfer Protein; TraF-Related Protein; Ribonuclease PH; IncI1 Plasmid Conjugative Transfer Protein TraF

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MVKSHGTVSVDGKVSDADLTYLEEVANSTGQEVDKSRLTSQAFARAALITDVGIALATELETAGQKWSLGFPPKFQRVDL
FNYNVLVRNYDSSAFKGDRYHNTKNGINADIGASTNLDDNWTLGLVAQNLIPRSIETKEVNGITETFRIRPQVTAGVSWH
NAMFTTAFDVDLTPASGFTSDSNRQFAAIGAEFNAWKWAQLRAGYRQNLAGNDGSAFTAGVGISPFDVVHLDVAGLIGTD
NTYGAVAQFQFTF

Sequences:

>Translated_253_residues
MVKSHGTVSVDGKVSDADLTYLEEVANSTGQEVDKSRLTSQAFARAALITDVGIALATELETAGQKWSLGFPPKFQRVDL
FNYNVLVRNYDSSAFKGDRYHNTKNGINADIGASTNLDDNWTLGLVAQNLIPRSIETKEVNGITETFRIRPQVTAGVSWH
NAMFTTAFDVDLTPASGFTSDSNRQFAAIGAEFNAWKWAQLRAGYRQNLAGNDGSAFTAGVGISPFDVVHLDVAGLIGTD
NTYGAVAQFQFTF
>Mature_253_residues
MVKSHGTVSVDGKVSDADLTYLEEVANSTGQEVDKSRLTSQAFARAALITDVGIALATELETAGQKWSLGFPPKFQRVDL
FNYNVLVRNYDSSAFKGDRYHNTKNGINADIGASTNLDDNWTLGLVAQNLIPRSIETKEVNGITETFRIRPQVTAGVSWH
NAMFTTAFDVDLTPASGFTSDSNRQFAAIGAEFNAWKWAQLRAGYRQNLAGNDGSAFTAGVGISPFDVVHLDVAGLIGTD
NTYGAVAQFQFTF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27417; Mature: 27417

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKSHGTVSVDGKVSDADLTYLEEVANSTGQEVDKSRLTSQAFARAALITDVGIALATEL
CCCCCCCEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ETAGQKWSLGFPPKFQRVDLFNYNVLVRNYDSSAFKGDRYHNTKNGINADIGASTNLDDN
HHCCCEEECCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
WTLGLVAQNLIPRSIETKEVNGITETFRIRPQVTAGVSWHNAMFTTAFDVDLTPASGFTS
EEEHHHHHHHCCCCCCCHHCCCCCEEEEECCCEEECCEECCEEEEEEEEEEECCCCCCCC
DSNRQFAAIGAEFNAWKWAQLRAGYRQNLAGNDGSAFTAGVGISPFDVVHLDVAGLIGTD
CCCCEEEEECCCCCCEEHHHHHCCHHHCCCCCCCCEEEECCCCCCEEEEEEEEEEEEECC
NTYGAVAQFQFTF
CCCCEEEEEEEEC
>Mature Secondary Structure
MVKSHGTVSVDGKVSDADLTYLEEVANSTGQEVDKSRLTSQAFARAALITDVGIALATEL
CCCCCCCEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ETAGQKWSLGFPPKFQRVDLFNYNVLVRNYDSSAFKGDRYHNTKNGINADIGASTNLDDN
HHCCCEEECCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
WTLGLVAQNLIPRSIETKEVNGITETFRIRPQVTAGVSWHNAMFTTAFDVDLTPASGFTS
EEEHHHHHHHCCCCCCCHHCCCCCEEEEECCCEEECCEECCEEEEEEEEEEECCCCCCCC
DSNRQFAAIGAEFNAWKWAQLRAGYRQNLAGNDGSAFTAGVGISPFDVVHLDVAGLIGTD
CCCCEEEEECCCCCCEEHHHHHCCHHHCCCCCCCCEEEECCCCCCEEEEEEEEEEEEECC
NTYGAVAQFQFTF
CCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA