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The map label for this gene is kdgT [H]

Identifier: 161984813

GI number: 161984813

Start: 3955284

End: 3956249

Strand: Direct

Name: kdgT [H]

Synonym: SBO_3927

Alternate gene names: 161984813

Gene position: 3955284-3956249 (Clockwise)

Preceding gene: 82546258

Following gene: 161984812

Centisome position: 87.51

GC content: 52.59

Gene sequence:

>966_bases
TTGAGAAAATCCCGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGG
GAAATATTTTGGATCATTCACCAACGGGATGATTACCGGTACGGTGTCCATTCTGGCGGTGTGGTTTTTTTGCATGGGGG
CGTCAATAAAATTAAGCGCGACGGGAACGGTATTGCGTAAATCCGGTACGCTGGTGGTAACAAAAATTGCCGTCGCGTGG
GTGGTTGCGGCAATTGCCTCGCGCATTATTCCGGAACATGGTGTTGAAGTTGGATTCTTTGCCGGACTTTCAACGCTGGC
GCTGGTGGCGGCGATGGATATGACCAATGGCGGACTTTACGCTTCCATCATGCAGCAGTACGGCACAAAAGAAGAAGCTG
GGGCATTTGTGTTGATGTCGTTGGAGTCCGGGCCGCTCATGACGATGATTATTCTGGGCACTGCAGGGATTGCCTCGTTT
GAACCGCATGTTTTCGTCGGCGCAGTATTACCGTTCCTGGTGGGCTTTGCCCTGGGGAACCTTGACCCTGAATTACGAGA
ATTTTTCAGCAAAGCGGTGCAAACGCTGATTCCATTCTTTGCCTTCGCGCTGGGCAATACCATTGATTTGACTGTGATTG
CCCAGACTGGTTTGCTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAA
TTGATTGGCGGTGGCGATGGCACTGCCGGAATTGCCGCTTCCAGTTCCGCAGGGGCCGCGGTAGCGACACCTATGCTGAT
TGCAGAAATGGTGCCTGCGTTTAAACCGATGGCTCCGGCAGCAACTTCGCTGGTAGCGACGGCGGTCATTGTGACTTCGA
TTCTGGTGCCAATTCTTACCTCTATCTGGTCACGTAAAGTCAAAGCCAGAGCAGCGAAAATCGAAATTTTAGGTACGGTG
AAATAA

Upstream 100 bases:

>100_bases
CTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGA
AATGCAGATAAAACGCTCGA

Downstream 100 bases:

>100_bases
ACCTGCTTCCTTAATCCCCACAGCCGGATGAACTAACGTTCGTCCGGTTTGCTATTGAGTTCCTGCCTGGATACTTACCG
CGAAAACAGCACGCCTGACA

Product: 2-keto-3-deoxygluconate permease

Products: Proton [Cytoplasm]; 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

Alternate protein names: KDG permease [H]

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MRKSRGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITGTVSILAVWFFCMGASIKLSATGTVLRKSGTLVVTKIAVAW
VVAAIASRIIPEHGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMIILGTAGIASF
EPHVFVGAVLPFLVGFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLTVIAQTGLLGILLGVAVIIVTGIPLIIADK
LIGGGDGTAGIAASSSAGAAVATPMLIAEMVPAFKPMAPAATSLVATAVIVTSILVPILTSIWSRKVKARAAKIEILGTV
K

Sequences:

>Translated_321_residues
MRKSRGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITGTVSILAVWFFCMGASIKLSATGTVLRKSGTLVVTKIAVAW
VVAAIASRIIPEHGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMIILGTAGIASF
EPHVFVGAVLPFLVGFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLTVIAQTGLLGILLGVAVIIVTGIPLIIADK
LIGGGDGTAGIAASSSAGAAVATPMLIAEMVPAFKPMAPAATSLVATAVIVTSILVPILTSIWSRKVKARAAKIEILGTV
K
>Mature_321_residues
MRKSRGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITGTVSILAVWFFCMGASIKLSATGTVLRKSGTLVVTKIAVAW
VVAAIASRIIPEHGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMIILGTAGIASF
EPHVFVGAVLPFLVGFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLTVIAQTGLLGILLGVAVIIVTGIPLIIADK
LIGGGDGTAGIAASSSAGAAVATPMLIAEMVPAFKPMAPAATSLVATAVIVTSILVPILTSIWSRKVKARAAKIEILGTV
K

Specific function: The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kdgT transporter family [H]

Homologues:

Organism=Escherichia coli, GI87082349, Length=321, Percent_Identity=98.1308411214953, Blast_Score=610, Evalue=1e-176,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004684
- InterPro:   IPR018395
- ProDom:   PD024513 [H]

Pfam domain/function: PF03812 KdgT [H]

EC number: NA

Molecular weight: Translated: 33026; Mature: 33026

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKSRGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITGTVSILAVWFFCMGASIKLSA
CCCCCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEC
TGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEHGVEVGFFAGLSTLALVAAMDMTNGGLY
CCCEEECCCCEEHHHHHHHHHHHHHHHHHCHHCCCCHHHHHHHHHHHHHHHHHCCCCCHH
ASIMQQYGTKEEAGAFVLMSLESGPLMTMIILGTAGIASFEPHVFVGAVLPFLVGFALGN
HHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCC
LDPELREFFSKAVQTLIPFFAFALGNTIDLTVIAQTGLLGILLGVAVIIVTGIPLIIADK
CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHH
LIGGGDGTAGIAASSSAGAAVATPMLIAEMVPAFKPMAPAATSLVATAVIVTSILVPILT
HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
SIWSRKVKARAAKIEILGTVK
HHHHHHHHHHHHEEEEEEECC
>Mature Secondary Structure
MRKSRGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITGTVSILAVWFFCMGASIKLSA
CCCCCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEC
TGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEHGVEVGFFAGLSTLALVAAMDMTNGGLY
CCCEEECCCCEEHHHHHHHHHHHHHHHHHCHHCCCCHHHHHHHHHHHHHHHHHCCCCCHH
ASIMQQYGTKEEAGAFVLMSLESGPLMTMIILGTAGIASFEPHVFVGAVLPFLVGFALGN
HHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCC
LDPELREFFSKAVQTLIPFFAFALGNTIDLTVIAQTGLLGILLGVAVIIVTGIPLIIADK
CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHH
LIGGGDGTAGIAASSSAGAAVATPMLIAEMVPAFKPMAPAATSLVATAVIVTSILVPILT
HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
SIWSRKVKARAAKIEILGTVK
HHHHHHHHHHHHEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; 2-dehydro-3-deoxy-D-gluconate [Periplasm] [C]

Specific reaction: Proton [Periplasm] + 2-dehydro-3-deoxy-D-gluconate [Periplasm] = Proton [Cytoplasm] + 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA