Definition Shigella boydii Sb227, complete genome.
Accession NC_007613
Length 4,519,823

Click here to switch to the map view.

The map label for this gene is yjiI [H]

Identifier: 161984785

GI number: 161984785

Start: 4434874

End: 4435272

Strand: Direct

Name: yjiI [H]

Synonym: SBO_4382

Alternate gene names: 161984785

Gene position: 4434874-4435272 (Clockwise)

Preceding gene: 82546673

Following gene: 82546685

Centisome position: 98.12

GC content: 50.13

Gene sequence:

>399_bases
ATGGCAAAGCACAACGAAAAAGAGCTGGCGGATACGAGCAAGTTTTTAAGTTTTGTCCTCCGACACAAACCGGAGGCGAT
TGGTATCGTACTGGACCGTGAAGGATGGGCGGATATCGATAAGCTCATACTTTGTGCCCAAAAAGCGGGCAAGCGATTAA
CCCGTGCATTGCTGGATACCGTGGTCGCAACCAGCGATAAAAAGCGTTTTAGTTATTCCAGTGATGGTAGGTGCATCCGC
GCGGTTCAGGGGCATTCGACTTCGCAGGTCGCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTAC
GGCAAGCCGTTTCCTTGACGAGATAAAAAAAACAGGGGCTGATTGCAGGGGATCGTCATTACGTGCATCTCTCTGCTGA

Upstream 100 bases:

>100_bases
GTGGAAAAGGTTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCCAGTGACAATGACATTGGTAAATAAAAACAGAA
AATCCAGGGACGAAAACGAG

Downstream 100 bases:

>100_bases
TGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGCCGGTTGTCTTAACCGTCAAAGCACAGGAAATGGCGAAAC
GAGGCATTCCTTTCTGGCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 131

Protein sequence:

>132_residues
MAKHNEKELADTSKFLSFVLRHKPEAIGIVLDREGWADIDKLILCAQKAGKRLTRALLDTVVATSDKKRFSYSSDGRCIR
AVQGHSTSQVAISFAEKTPPQFLYHGTASRFLDEIKKTGADCRGSSLRASLC

Sequences:

>Translated_132_residues
MAKHNEKELADTSKFLSFVLRHKPEAIGIVLDREGWADIDKLILCAQKAGKRLTRALLDTVVATSDKKRFSYSSDGRCIR
AVQGHSTSQVAISFAEKTPPQFLYHGTASRFLDEIKKTGADCRGSSLRASLC
>Mature_131_residues
AKHNEKELADTSKFLSFVLRHKPEAIGIVLDREGWADIDKLILCAQKAGKRLTRALLDTVVATSDKKRFSYSSDGRCIRA
VQGHSTSQVAISFAEKTPPQFLYHGTASRFLDEIKKTGADCRGSSLRASLC

Specific function: Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP- ribose 1''-2''-cyclic phosphate (APPR>P). May function as an ADP- ribosy

COG id: COG1859

COG function: function code J; RNA:NAD 2'-phosphotransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kptA/TPT1 family [H]

Homologues:

Organism=Escherichia coli, GI87082424, Length=119, Percent_Identity=98.3193277310924, Blast_Score=243, Evalue=4e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022928
- InterPro:   IPR002745 [H]

Pfam domain/function: PF01885 PTS_2-RNA [H]

EC number: 2.7.-.- [C]

Molecular weight: Translated: 14585; Mature: 14454

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKHNEKELADTSKFLSFVLRHKPEAIGIVLDREGWADIDKLILCAQKAGKRLTRALLDT
CCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
VVATSDKKRFSYSSDGRCIRAVQGHSTSQVAISFAEKTPPQFLYHGTASRFLDEIKKTGA
HHHCCCCCCCCCCCCCCEEEEECCCCCCHHEEEECCCCCHHHHHHCHHHHHHHHHHHCCC
DCRGSSLRASLC
CCCCCCCCCCCC
>Mature Secondary Structure 
AKHNEKELADTSKFLSFVLRHKPEAIGIVLDREGWADIDKLILCAQKAGKRLTRALLDT
CCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
VVATSDKKRFSYSSDGRCIRAVQGHSTSQVAISFAEKTPPQFLYHGTASRFLDEIKKTGA
HHHCCCCCCCCCCCCCCEEEEECCCCCCHHEEEECCCCCHHHHHHCHHHHHHHHHHHCCC
DCRGSSLRASLC
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA