| Definition | Prochlorococcus marinus str. MIT 9312, complete genome. |
|---|---|
| Accession | NC_007577 |
| Length | 1,709,204 |
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The map label for this gene is secA
Identifier: 78780117
GI number: 78780117
Start: 1618103
End: 1620934
Strand: Reverse
Name: secA
Synonym: PMT9312_1732
Alternate gene names: 78780117
Gene position: 1620934-1618103 (Counterclockwise)
Preceding gene: 78780119
Following gene: 78780112
Centisome position: 94.84
GC content: 34.11
Gene sequence:
>2832_bases ATGCTAAAACTTTTGTTGGGAGATCCGAATACACGAAAGTTAAAGCGCTATCAACCAATAGTGGAAGAGATAAATTTTTT AGAAGAAGAAATTTCTAAATTAACTGATGATGAGTTGAGACAAGAAACTCATAATCTCAAATCACAGATCTCATCAGAAT CAGATATTAAACAACAAAAAGAACTCTTGGATGAATCTCTTCCAAAAGCCTTTGCGATTGTTAGAGAAGCAAGTAAACGT GTTCTGGATATGCGACATTTTGATGTTCAGTTAATAGGCGGGATGGTTTTACATGAATGTCAAATCGCTGAGATGAAGAC TGGAGAAGGAAAAACTCTTGTAGCAACATTACCTTGTTATTTAAATGCTTTAACTGGAAAAGGGGTTCATGTAGTTACTG TAAATGATTATTTAGCTAGAAGAGATGCTGAGTGGATGGGCCAAGTTCATCGTTTTTTAGGCTTATCCGTTGGTTTGATT CAACAAGATATGAGCCCTGTTCAGAGAAAGAAAAATTACGACTGCGATATAACTTATGCTACGAATTCTGAATTAGGATT TGATTATTTAAGAGATAATATGTCCACCGATATTAATGAGGTAGTGCAAAGACCATTCAATTACTGTGTGATTGATGAGG TTGATTCAATATTAATTGATGAAGCAAGAACACCTCTAATCATTTCTGGCCAAGTTGAAAGACCCCAAGAAAAATATCAA AAAGCTTCAGAATTAGCTCTGGCACTAGTTAAAGCAAAAGAAATAGGTAAAGATGGTATAGATCCAGAAGGCGATTATGA AGTTGATGAAAAGCAGAGAAGTTGTATATTAACTGATCAGGGTTTCGCTAAATGTGAAGAGTATTTGGCAGTTAGCGATT TATATAATCCCAAAGATCCTTGGGCGCACTACATAACCAATGCTTTAAAAGCTAAAGAATTATTTATTAAAGATGTAAAT TATATTATTAAAAATAATGAGGCTGTAATAGTGGACGAATTTACAGGAAGAGTAATGCCAGGAAGGAGATGGAGTGACGG ACAGCATCAGGCGATAGAAGCGAAAGAGAGTCTTAAAATTCAGCCTGAGACTCAAACATTAGCATCTATAACTTATCAGA ATTTTTTCCTTTTATATCCTGGTTTGGCAGGTATGACAGGAACAGCAAAAACAGAAGAGGTTGAATTTGAAAAAACTTAT AAATTAGAATCAACCGTTATACCAACAAATCAAATAAGAAAGAGAGAAGATTTGCCTGATCAAGTATTTAAGACAGAGAT AGGTAAATGGAAAGCTGTTGCTAGAGAAACTGCGCAAATTCATAGAGCTGGTAGACCTGTTTTAGTTGGTACAACAAGTG TTGAAAAAAGTGAGTTGTTAAGTTCACTTTTAGCTGAAGAAAAAATCCCACATAATTTGTTAAACGCTAAGCCAGAGAAC GTTGAACGTGAGGCAGAAATTGTAGCTCAGGCTGGAAGAGCAGGTGCTGTTACTATTGCTACTAATATGGCTGGAAGGGG AACAGATATAATTCTCGGCGGTAACAGTGATTATATGGCAAGACTTAAATTAAAAGAGATTCTAATTCCTTTATTAGTAA AGCCAAATAATGAGCATAAGCCACCAATCCCTAAACAACGAAGTTCAAAATCTAAGGGTGGTTTTTCTTCAAAAGTTGGC TCAAATTTAACAAAGAACATTCCAGACTATTCAACAAGTCTTTTTCCTTGCAAACTGGATGAAGAAATCCAAAAGAAACT CTCAGTTTTATCTGATGAACTTGTTAAGAATTGGGGTGATAGACAACTTTCTGTCTTGGATTTAGATGACAGAATAGCTA CAGCTGCAGAAAAAGCACCAACCGAAGATAAAATGATAAAGCTTTTGAGAGAATCTTTATCACGTGTAAAAGACGAATAT GAAAAAGTGTTGACTCATGAAGAAAAAAAAGTAAGAGAAGTCGGAGGCTTACATGTTATTGGTACTGAGAGACATGAATC AAGAAGGGTGGATAATCAACTTAGAGGTAGAGCAGGAAGACAAGGTGATTTTGGAAGTACAAGATTCTTTTTATCTTTAG AAGATAATTTATTAAGGATTTTTGGGGGTGAAAGGGTAGCAAATCTAATGAATGCATTTAGGGTTGATGAAGATATGCCT ATAGAATCAGGAATGCTTACTAGGTCTTTAGAAAGTGCTCAAAAGAAAGTAGAAACATATTATTACGATATTAGAAAACA AGTTTTTGAATATGATGAGGTAATGAATAATCAAAGAAAGGCAGTTTATAGCGAAAGACTAAGAGTCTTGCAAGGCACTG ATTTAAAGAGACAAGTTATAGGATATGGAGAAAGAACAATGTATGAAATTGTGGAGGCTTATATTAATCCTGATCTACCT CCAGAAGAATGGGATATTGCTCAATTAATTTCTAAAGTCAAAGAATTTATATATTTATTAGATGACCTTAAAGCTGATGA CGTCAAGTTACTTTCAATAGAAGAATTAAAAAACTATCTTCAAGAGCAATTGCGAACAGCTTATGATTTGAAGGAATCAC AAATAGAACAGATTAGACCAGGATTAATGAGAGAAGCTGAAAGATTCTTTATTTTGCAGCAAATTGATAATTTATGGAGA GAACATCTTCAATCCATGGATTCTTTAAGAGAATCGGTTGGATTGAGAGGTTATGGACAAAAAGATCCTTTAATCGAGTA CAAAAATGAAGGATATGATATGTTTCTCGAAATGATGACTAATATGAGACGCAATGTTATTTATTCAATGTTTATGTTTC AACCTAAAACTGATAAGGATGATAAAAATTAA
Upstream 100 bases:
>100_bases ATTTCTATAAAATTAAAGAGATATGATTTTTCTTCATTCTGTTGTAACGCACTAATTTATAATGTTTGTAATAAGATGAA TTTTTCAAGGACTGTTACTT
Downstream 100 bases:
>100_bases ATCAATATTTAATCATCTCCAAGAAATTCTATGATTTCTTTGTCTTTAAGATTTTGAGCCTCACCAAGTTTAGAAATATC AATAGATTCTGAGTTAGCTA
Product: preprotein translocase subunit SecA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 943; Mature: 943
Protein sequence:
>943_residues MLKLLLGDPNTRKLKRYQPIVEEINFLEEEISKLTDDELRQETHNLKSQISSESDIKQQKELLDESLPKAFAIVREASKR VLDMRHFDVQLIGGMVLHECQIAEMKTGEGKTLVATLPCYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLI QQDMSPVQRKKNYDCDITYATNSELGFDYLRDNMSTDINEVVQRPFNYCVIDEVDSILIDEARTPLIISGQVERPQEKYQ KASELALALVKAKEIGKDGIDPEGDYEVDEKQRSCILTDQGFAKCEEYLAVSDLYNPKDPWAHYITNALKAKELFIKDVN YIIKNNEAVIVDEFTGRVMPGRRWSDGQHQAIEAKESLKIQPETQTLASITYQNFFLLYPGLAGMTGTAKTEEVEFEKTY KLESTVIPTNQIRKREDLPDQVFKTEIGKWKAVARETAQIHRAGRPVLVGTTSVEKSELLSSLLAEEKIPHNLLNAKPEN VEREAEIVAQAGRAGAVTIATNMAGRGTDIILGGNSDYMARLKLKEILIPLLVKPNNEHKPPIPKQRSSKSKGGFSSKVG SNLTKNIPDYSTSLFPCKLDEEIQKKLSVLSDELVKNWGDRQLSVLDLDDRIATAAEKAPTEDKMIKLLRESLSRVKDEY EKVLTHEEKKVREVGGLHVIGTERHESRRVDNQLRGRAGRQGDFGSTRFFLSLEDNLLRIFGGERVANLMNAFRVDEDMP IESGMLTRSLESAQKKVETYYYDIRKQVFEYDEVMNNQRKAVYSERLRVLQGTDLKRQVIGYGERTMYEIVEAYINPDLP PEEWDIAQLISKVKEFIYLLDDLKADDVKLLSIEELKNYLQEQLRTAYDLKESQIEQIRPGLMREAERFFILQQIDNLWR EHLQSMDSLRESVGLRGYGQKDPLIEYKNEGYDMFLEMMTNMRRNVIYSMFMFQPKTDKDDKN
Sequences:
>Translated_943_residues MLKLLLGDPNTRKLKRYQPIVEEINFLEEEISKLTDDELRQETHNLKSQISSESDIKQQKELLDESLPKAFAIVREASKR VLDMRHFDVQLIGGMVLHECQIAEMKTGEGKTLVATLPCYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLI QQDMSPVQRKKNYDCDITYATNSELGFDYLRDNMSTDINEVVQRPFNYCVIDEVDSILIDEARTPLIISGQVERPQEKYQ KASELALALVKAKEIGKDGIDPEGDYEVDEKQRSCILTDQGFAKCEEYLAVSDLYNPKDPWAHYITNALKAKELFIKDVN YIIKNNEAVIVDEFTGRVMPGRRWSDGQHQAIEAKESLKIQPETQTLASITYQNFFLLYPGLAGMTGTAKTEEVEFEKTY KLESTVIPTNQIRKREDLPDQVFKTEIGKWKAVARETAQIHRAGRPVLVGTTSVEKSELLSSLLAEEKIPHNLLNAKPEN VEREAEIVAQAGRAGAVTIATNMAGRGTDIILGGNSDYMARLKLKEILIPLLVKPNNEHKPPIPKQRSSKSKGGFSSKVG SNLTKNIPDYSTSLFPCKLDEEIQKKLSVLSDELVKNWGDRQLSVLDLDDRIATAAEKAPTEDKMIKLLRESLSRVKDEY EKVLTHEEKKVREVGGLHVIGTERHESRRVDNQLRGRAGRQGDFGSTRFFLSLEDNLLRIFGGERVANLMNAFRVDEDMP IESGMLTRSLESAQKKVETYYYDIRKQVFEYDEVMNNQRKAVYSERLRVLQGTDLKRQVIGYGERTMYEIVEAYINPDLP PEEWDIAQLISKVKEFIYLLDDLKADDVKLLSIEELKNYLQEQLRTAYDLKESQIEQIRPGLMREAERFFILQQIDNLWR EHLQSMDSLRESVGLRGYGQKDPLIEYKNEGYDMFLEMMTNMRRNVIYSMFMFQPKTDKDDKN >Mature_943_residues MLKLLLGDPNTRKLKRYQPIVEEINFLEEEISKLTDDELRQETHNLKSQISSESDIKQQKELLDESLPKAFAIVREASKR VLDMRHFDVQLIGGMVLHECQIAEMKTGEGKTLVATLPCYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLI QQDMSPVQRKKNYDCDITYATNSELGFDYLRDNMSTDINEVVQRPFNYCVIDEVDSILIDEARTPLIISGQVERPQEKYQ KASELALALVKAKEIGKDGIDPEGDYEVDEKQRSCILTDQGFAKCEEYLAVSDLYNPKDPWAHYITNALKAKELFIKDVN YIIKNNEAVIVDEFTGRVMPGRRWSDGQHQAIEAKESLKIQPETQTLASITYQNFFLLYPGLAGMTGTAKTEEVEFEKTY KLESTVIPTNQIRKREDLPDQVFKTEIGKWKAVARETAQIHRAGRPVLVGTTSVEKSELLSSLLAEEKIPHNLLNAKPEN VEREAEIVAQAGRAGAVTIATNMAGRGTDIILGGNSDYMARLKLKEILIPLLVKPNNEHKPPIPKQRSSKSKGGFSSKVG SNLTKNIPDYSTSLFPCKLDEEIQKKLSVLSDELVKNWGDRQLSVLDLDDRIATAAEKAPTEDKMIKLLRESLSRVKDEY EKVLTHEEKKVREVGGLHVIGTERHESRRVDNQLRGRAGRQGDFGSTRFFLSLEDNLLRIFGGERVANLMNAFRVDEDMP IESGMLTRSLESAQKKVETYYYDIRKQVFEYDEVMNNQRKAVYSERLRVLQGTDLKRQVIGYGERTMYEIVEAYINPDLP PEEWDIAQLISKVKEFIYLLDDLKADDVKLLSIEELKNYLQEQLRTAYDLKESQIEQIRPGLMREAERFFILQQIDNLWR EHLQSMDSLRESVGLRGYGQKDPLIEYKNEGYDMFLEMMTNMRRNVIYSMFMFQPKTDKDDKN
Specific function: Probably participates in protein translocation into and across both the cytoplasmic and thylakoid membranes in cyanobacterial cells (Potential) [H]
COG id: COG0653
COG function: function code U; Preprotein translocase subunit SecA (ATPase, RNA helicase)
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Cytoplasm (By similarity) [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the secA family [H]
Homologues:
Organism=Escherichia coli, GI1786287, Length=523, Percent_Identity=53.5372848948375, Blast_Score=531, Evalue=1e-152,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000185 - InterPro: IPR020937 - InterPro: IPR011115 - InterPro: IPR014018 - InterPro: IPR011130 - InterPro: IPR011116 [H]
Pfam domain/function: PF07517 SecA_DEAD; PF01043 SecA_PP_bind; PF07516 SecA_SW [H]
EC number: NA
Molecular weight: Translated: 108066; Mature: 108066
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: PS01312 SECA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKLLLGDPNTRKLKRYQPIVEEINFLEEEISKLTDDELRQETHNLKSQISSESDIKQQK CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHH ELLDESLPKAFAIVREASKRVLDMRHFDVQLIGGMVLHECQIAEMKTGEGKTLVATLPCY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHH LNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPVQRKKNYDCDITYA HHHHCCCCEEEEEECHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEE TNSELGFDYLRDNMSTDINEVVQRPFNYCVIDEVDSILIDEARTPLIISGQVERPQEKYQ CCCCCCHHHHHHCCCCCHHHHHHCCCCEEEHHHHHHHHHHCCCCCEEEECCCCCHHHHHH KASELALALVKAKEIGKDGIDPEGDYEVDEKQRSCILTDQGFAKCEEYLAVSDLYNPKDP HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCH WAHYITNALKAKELFIKDVNYIIKNNEAVIVDEFTGRVMPGRRWSDGQHQAIEAKESLKI HHHHHHHHHHHHHHHHHHHHHHEECCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCC QPETQTLASITYQNFFLLYPGLAGMTGTAKTEEVEFEKTYKLESTVIPTNQIRKREDLPD CCCHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHCCCHH QVFKTEIGKWKAVARETAQIHRAGRPVLVGTTSVEKSELLSSLLAEEKIPHNLLNAKPEN HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCHHHHCCCCCC VEREAEIVAQAGRAGAVTIATNMAGRGTDIILGGNSDYMARLKLKEILIPLLVKPNNEHK HHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHEECCCCCCC PPIPKQRSSKSKGGFSSKVGSNLTKNIPDYSTSLFPCKLDEEIQKKLSVLSDELVKNWGD CCCCCCCCCCCCCCCHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC RQLSVLDLDDRIATAAEKAPTEDKMIKLLRESLSRVKDEYEKVLTHEEKKVREVGGLHVI CEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE GTERHESRRVDNQLRGRAGRQGDFGSTRFFLSLEDNLLRIFGGERVANLMNAFRVDEDMP ECCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHCCHHHHHHHHHHHCCCCCC IESGMLTRSLESAQKKVETYYYDIRKQVFEYDEVMNNQRKAVYSERLRVLQGTDLKRQVI CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHH GYGERTMYEIVEAYINPDLPPEEWDIAQLISKVKEFIYLLDDLKADDVKLLSIEELKNYL CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHH QEQLRTAYDLKESQIEQIRPGLMREAERFFILQQIDNLWREHLQSMDSLRESVGLRGYGQ HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC KDPLIEYKNEGYDMFLEMMTNMRRNVIYSMFMFQPKTDKDDKN CCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MLKLLLGDPNTRKLKRYQPIVEEINFLEEEISKLTDDELRQETHNLKSQISSESDIKQQK CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHH ELLDESLPKAFAIVREASKRVLDMRHFDVQLIGGMVLHECQIAEMKTGEGKTLVATLPCY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHH LNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPVQRKKNYDCDITYA HHHHCCCCEEEEEECHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEE TNSELGFDYLRDNMSTDINEVVQRPFNYCVIDEVDSILIDEARTPLIISGQVERPQEKYQ CCCCCCHHHHHHCCCCCHHHHHHCCCCEEEHHHHHHHHHHCCCCCEEEECCCCCHHHHHH KASELALALVKAKEIGKDGIDPEGDYEVDEKQRSCILTDQGFAKCEEYLAVSDLYNPKDP HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCH WAHYITNALKAKELFIKDVNYIIKNNEAVIVDEFTGRVMPGRRWSDGQHQAIEAKESLKI HHHHHHHHHHHHHHHHHHHHHHEECCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCC QPETQTLASITYQNFFLLYPGLAGMTGTAKTEEVEFEKTYKLESTVIPTNQIRKREDLPD CCCHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHCCCHH QVFKTEIGKWKAVARETAQIHRAGRPVLVGTTSVEKSELLSSLLAEEKIPHNLLNAKPEN HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCHHHHCCCCCC VEREAEIVAQAGRAGAVTIATNMAGRGTDIILGGNSDYMARLKLKEILIPLLVKPNNEHK HHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHEECCCCCCC PPIPKQRSSKSKGGFSSKVGSNLTKNIPDYSTSLFPCKLDEEIQKKLSVLSDELVKNWGD CCCCCCCCCCCCCCCHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC RQLSVLDLDDRIATAAEKAPTEDKMIKLLRESLSRVKDEYEKVLTHEEKKVREVGGLHVI CEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE GTERHESRRVDNQLRGRAGRQGDFGSTRFFLSLEDNLLRIFGGERVANLMNAFRVDEDMP ECCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHCCHHHHHHHHHHHCCCCCC IESGMLTRSLESAQKKVETYYYDIRKQVFEYDEVMNNQRKAVYSERLRVLQGTDLKRQVI CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHH GYGERTMYEIVEAYINPDLPPEEWDIAQLISKVKEFIYLLDDLKADDVKLLSIEELKNYL CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHH QEQLRTAYDLKESQIEQIRPGLMREAERFFILQQIDNLWREHLQSMDSLRESVGLRGYGQ HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC KDPLIEYKNEGYDMFLEMMTNMRRNVIYSMFMFQPKTDKDDKN CCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA