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The map label for this gene is 78780005

Identifier: 78780005

GI number: 78780005

Start: 1522104

End: 1522661

Strand: Direct

Name: 78780005

Synonym: PMT9312_1621

Alternate gene names: NA

Gene position: 1522104-1522661 (Clockwise)

Preceding gene: 78780002

Following gene: 78780036

Centisome position: 89.05

GC content: 35.13

Gene sequence:

>558_bases
ATGCGCTTATTGAAATATACAGTTAGCATGACATGTAAATTCTATTTTGGCATGGGCCAGACTCTAGTTTTAAATGCATC
CTATGAACCTTTAAATATCACTTCTTGGCGAAGAGCTGTTATTTTAATGATCAAAGGTAAAGCAGAAAGCTTAGAGGAAG
ATAAATCTTATTCAATACATTGCGGCAGAAAATTACCTACAGTTATAAGACTTCGTTACTACGTTAAGGTACCTTTTAGG
GAGGTTTCTTTAACAAGAAAAAATATTCTTCTAAGAGATAATAATGCCTGTCAATACTGTAACTACAGAGGTAGTGATTT
ATCAATAGATCATGTTTTACCGAGAAGCAGAGGTGGAACTGATAACTGGGAAAATGTTACTACAGCTTGTCTTAGATGTA
ATGTACAAAAAGGTAACCGCACCCCAGAAGAGGCAAATATACCTTTAAAACGAAAGCCATACCGTCCACTAAGTAATCTC
AATTTTGAGGCTACAAGACAAATTGACTCTGGCAGACATAAAGAATGGAGTAAATATGTAATAGGGGTTGCAATCTAA

Upstream 100 bases:

>100_bases
GCTCTTTGTTTTGGATCTATATCTTTTTCAAAAGTTGGATATTTGTCAGAATTAAATCCATGATTTTTTTGCCGAATTTG
CATTAACTTTGCACATTTAT

Downstream 100 bases:

>100_bases
GAAAATAAAATCTTAATTCACATCGTTATTAAAATCTTCCATCATTCTCTTTTGCTCTTGCGCTATACATGCATCAATCA
CTTCATCCAACTGACCAGCG

Product: HNH endonuclease family protein

Products: NA

Alternate protein names: HNH Endonuclease Family Protein; Endonuclease; Restriction Endonuclease; HNH Endonuclease Domain Protein; HNH Endonuclease Domain-Containing Protein; Hnh Endonuclease; HNH Nuclease; McrA/HNH Family Nuclease; 5-Methylcytosine-Specific Restriction A; 5-Methylcytosine-Specific Restriction Protein; Restriction Endonuclease McrA/HNH Family; HNH EndonucleaseHNH Nuclease; HNH Family Endonuclease; LOW QUALITY PROTEIN Endonuclease; Hnh Endonuclease Domain Protein; 5-Methylcytosine-Specific Restriction Protein A

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MRLLKYTVSMTCKFYFGMGQTLVLNASYEPLNITSWRRAVILMIKGKAESLEEDKSYSIHCGRKLPTVIRLRYYVKVPFR
EVSLTRKNILLRDNNACQYCNYRGSDLSIDHVLPRSRGGTDNWENVTTACLRCNVQKGNRTPEEANIPLKRKPYRPLSNL
NFEATRQIDSGRHKEWSKYVIGVAI

Sequences:

>Translated_185_residues
MRLLKYTVSMTCKFYFGMGQTLVLNASYEPLNITSWRRAVILMIKGKAESLEEDKSYSIHCGRKLPTVIRLRYYVKVPFR
EVSLTRKNILLRDNNACQYCNYRGSDLSIDHVLPRSRGGTDNWENVTTACLRCNVQKGNRTPEEANIPLKRKPYRPLSNL
NFEATRQIDSGRHKEWSKYVIGVAI
>Mature_185_residues
MRLLKYTVSMTCKFYFGMGQTLVLNASYEPLNITSWRRAVILMIKGKAESLEEDKSYSIHCGRKLPTVIRLRYYVKVPFR
EVSLTRKNILLRDNNACQYCNYRGSDLSIDHVLPRSRGGTDNWENVTTACLRCNVQKGNRTPEEANIPLKRKPYRPLSNL
NFEATRQIDSGRHKEWSKYVIGVAI

Specific function: Unknown

COG id: COG1403

COG function: function code V; Restriction endonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21439; Mature: 21439

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLKYTVSMTCKFYFGMGQTLVLNASYEPLNITSWRRAVILMIKGKAESLEEDKSYSIH
CCEEEEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEE
CGRKLPTVIRLRYYVKVPFREVSLTRKNILLRDNNACQYCNYRGSDLSIDHVLPRSRGGT
ECCCCCCEEEEEEEEECCCHHEEEEECEEEEECCCCEEECCCCCCCEEHHHCCCCCCCCC
DNWENVTTACLRCNVQKGNRTPEEANIPLKRKPYRPLSNLNFEATRQIDSGRHKEWSKYV
CCHHHHEEEEHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEE
IGVAI
EEEEC
>Mature Secondary Structure
MRLLKYTVSMTCKFYFGMGQTLVLNASYEPLNITSWRRAVILMIKGKAESLEEDKSYSIH
CCEEEEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEE
CGRKLPTVIRLRYYVKVPFREVSLTRKNILLRDNNACQYCNYRGSDLSIDHVLPRSRGGT
ECCCCCCEEEEEEEEECCCHHEEEEECEEEEECCCCEEECCCCCCCEEHHHCCCCCCCCC
DNWENVTTACLRCNVQKGNRTPEEANIPLKRKPYRPLSNLNFEATRQIDSGRHKEWSKYV
CCHHHHEEEEHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEE
IGVAI
EEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA