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The map label for this gene is clpS

Identifier: 78779975

GI number: 78779975

Start: 1489210

End: 1489527

Strand: Reverse

Name: clpS

Synonym: PMT9312_1591

Alternate gene names: 78779975

Gene position: 1489527-1489210 (Counterclockwise)

Preceding gene: 78779976

Following gene: 78779972

Centisome position: 87.15

GC content: 33.33

Gene sequence:

>318_bases
ATGTTATCTATAAAGTTAGAACAAAGTGTAAGTAATAATTCAGCAGTGATTGAAAAGAAACCTGCTGAATTAAAAAATAA
ATCTCCAAAATATAGGGTTTTACTTCATAATGACCCAGTTAATTCTATGGAGTATGTCACTATTTCTCTACGAGAAGTTG
TGCCGCAATTAAGCGAACAAGATGCTATTGCCATAATGCTAGAGGCACACAATACGGGTGTAGGTTTGGTAATTGTTTGT
GATTTAGAGCCAGCAGAATTCTACTCAGAATCATTAAAATCGAAAGGAATTTCTAGTTCAATTGAGAAAGAGGATTAA

Upstream 100 bases:

>100_bases
TTCGTTTGTCAGCATTTAACTCACGATCAAACGTTCTTGATGCAATGGAAAGAATAATTAATATATAATTATTAGTACTA
TCTAGATTCTAGAAAATTTA

Downstream 100 bases:

>100_bases
TTAATAACGGTTGAATTTATTATTTAGAATGAGCTAATTTCCGTTCTGACAAGGGACGGACTTTTAAGGATTCTTTTAAG
GATGACTTTCCATATTCTCT

Product: ATP-dependent Clp protease adaptor protein ClpS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 105; Mature: 105

Protein sequence:

>105_residues
MLSIKLEQSVSNNSAVIEKKPAELKNKSPKYRVLLHNDPVNSMEYVTISLREVVPQLSEQDAIAIMLEAHNTGVGLVIVC
DLEPAEFYSESLKSKGISSSIEKED

Sequences:

>Translated_105_residues
MLSIKLEQSVSNNSAVIEKKPAELKNKSPKYRVLLHNDPVNSMEYVTISLREVVPQLSEQDAIAIMLEAHNTGVGLVIVC
DLEPAEFYSESLKSKGISSSIEKED
>Mature_105_residues
MLSIKLEQSVSNNSAVIEKKPAELKNKSPKYRVLLHNDPVNSMEYVTISLREVVPQLSEQDAIAIMLEAHNTGVGLVIVC
DLEPAEFYSESLKSKGISSSIEKED

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation [H]

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719 [H]

Pfam domain/function: PF02617 ClpS [H]

EC number: NA

Molecular weight: Translated: 11616; Mature: 11616

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSIKLEQSVSNNSAVIEKKPAELKNKSPKYRVLLHNDPVNSMEYVTISLREVVPQLSEQ
CEEEEECCCCCCCCEEEEECCCHHCCCCCCEEEEEECCCCCCEEEEEEEHHHHHHCCCCC
DAIAIMLEAHNTGVGLVIVCDLEPAEFYSESLKSKGISSSIEKED
CEEEEEEEECCCCEEEEEEEECCHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MLSIKLEQSVSNNSAVIEKKPAELKNKSPKYRVLLHNDPVNSMEYVTISLREVVPQLSEQ
CEEEEECCCCCCCCEEEEECCCHHCCCCCCEEEEEECCCCCCEEEEEEEHHHHHHCCCCC
DAIAIMLEAHNTGVGLVIVCDLEPAEFYSESLKSKGISSSIEKED
CEEEEEEEECCCCEEEEEEEECCHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA