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The map label for this gene is atpD [H]

Identifier: 78779915

GI number: 78779915

Start: 1428012

End: 1429472

Strand: Direct

Name: atpD [H]

Synonym: PMT9312_1531

Alternate gene names: 78779915

Gene position: 1428012-1429472 (Clockwise)

Preceding gene: 78779912

Following gene: 78779916

Centisome position: 83.55

GC content: 39.97

Gene sequence:

>1461_bases
ATGGTAGCAACTCCATCAACTTCTTCACAAACTAAAGGCGTAGTACGTCAGGTAATTGGCCCAGTTCTAGATGTAGAATT
TCCAGCTGGTAAATTGCCCAAAATATTAAATGCTTTAAGAATTGAAGCAAAAAATCCTGCTGGACAAGAAATAGCGCTCA
CTGCTGAGGTCCAACAGCTCCTTGGTGATCATAGAGTCAGGGCAGTGGCAATGAGTGGCACAGACGGCCTTGTAAGGGGT
ATGGAGGCAGTCGACACAGGTGCCCCAATATCTGTACCGGTAGGAGAAGCAACCTTAGGAAGAATATTTAATGTTTTAGG
AGAACCAGTAGATGAACAAGGTCCAGTAAAAACTAAAGATACTGCGCCAATTCATAGAGCTGCTCCAAAGTTAACTGACC
TAGAAACTAAGCCAAAAGTGTTTGAAACCGGAATTAAAGTTATCGACCTTTTAGCTCCTTACAGACAAGGAGGAAAAGTC
GGATTATTTGGAGGCGCTGGTGTTGGGAAGACTGTTCTTATTCAAGAGTTAATAAATAACATTGCAAAGGAACATGGTGG
AGTTTCTGTTTTTGGCGGCGTAGGAGAAAGAACCAGAGAAGGGAACGATTTATATGAAGAATTTAAAGAATCAGGGGTTA
TCAATGCTGATGATTTAACTCAATCAAAAGTTGCCTTATGTTTTGGACAGATGAATGAGCCACCTGGTGCAAGAATGAGA
GTAGGCTTATCAGCACTTACAATGGCCGAACATTTTAGAGATGTAAATAAACAAGACGTTCTACTTTTTGTTGATAACAT
TTTTAGATTTGTTCAAGCTGGTTCTGAAGTATCGGCTTTACTTGGAAGAATGCCTTCAGCTGTTGGGTACCAACCAACTC
TTGGGACTGATGTTGGTGAATTGCAAGAGAGGATTACATCTACATTAGAAGGCTCAATAACATCTATTCAGGCTGTTTAT
GTACCTGCAGATGATCTAACTGATCCTGCTCCAGCAACAACCTTTGCACATTTAGACGCTACTACTGTGCTTGCAAGAGC
TCTTGCAGCTAAGGGAATTTATCCCGCAGTTGACCCATTAGACTCAACAAGTACTATGCTTCAACCATCAGTTGTTGGCG
ATGAGCATTACAAAACAGCCAGAGCGGTTCAATCAACTTTGCAAAGATATAAAGAATTACAAGACATTATTGCAATTCTT
GGTTTGGATGAGCTTTCTGAAGAGGATAGATTAACAGTTGACAGGGCTAGAAAAATTGAAAAATTCCTTTCCCAACCTTT
CTTCGTAGCAGAAATATTTACTGGGATGTCAGGTAAATACGTCAAATTAGAAGAAACCATAGCTGGTTTCAACATGATTT
TGTCAGGCGAATTAGATGATTTACCAGAACAGGCATTTTACTTGGTTGGTAACATTGATGAAGTCAAAGCAAAGGCTGAA
AAACTAAAGTCAGAAAAATAA

Upstream 100 bases:

>100_bases
GCGGGTGGCCGAACCCATTTAACGAATCTACCCATTAAGTGGTAGTATTTTCGGATTATGAGCTGTTTAAAATCAGCTAA
TCATCACCAATCAATAAAAA

Downstream 100 bases:

>100_bases
ATACCTAAAATATTTTTTTAACCTTCAATAATTTTAAATTAATGCCAATTTCTCTCAAAGTTTTAGCTCCTAACAAAAAT
GTTTATCAAGGCGAAGCTGA

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 486; Mature: 486

Protein sequence:

>486_residues
MVATPSTSSQTKGVVRQVIGPVLDVEFPAGKLPKILNALRIEAKNPAGQEIALTAEVQQLLGDHRVRAVAMSGTDGLVRG
MEAVDTGAPISVPVGEATLGRIFNVLGEPVDEQGPVKTKDTAPIHRAAPKLTDLETKPKVFETGIKVIDLLAPYRQGGKV
GLFGGAGVGKTVLIQELINNIAKEHGGVSVFGGVGERTREGNDLYEEFKESGVINADDLTQSKVALCFGQMNEPPGARMR
VGLSALTMAEHFRDVNKQDVLLFVDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVGELQERITSTLEGSITSIQAVY
VPADDLTDPAPATTFAHLDATTVLARALAAKGIYPAVDPLDSTSTMLQPSVVGDEHYKTARAVQSTLQRYKELQDIIAIL
GLDELSEEDRLTVDRARKIEKFLSQPFFVAEIFTGMSGKYVKLEETIAGFNMILSGELDDLPEQAFYLVGNIDEVKAKAE
KLKSEK

Sequences:

>Translated_486_residues
MVATPSTSSQTKGVVRQVIGPVLDVEFPAGKLPKILNALRIEAKNPAGQEIALTAEVQQLLGDHRVRAVAMSGTDGLVRG
MEAVDTGAPISVPVGEATLGRIFNVLGEPVDEQGPVKTKDTAPIHRAAPKLTDLETKPKVFETGIKVIDLLAPYRQGGKV
GLFGGAGVGKTVLIQELINNIAKEHGGVSVFGGVGERTREGNDLYEEFKESGVINADDLTQSKVALCFGQMNEPPGARMR
VGLSALTMAEHFRDVNKQDVLLFVDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVGELQERITSTLEGSITSIQAVY
VPADDLTDPAPATTFAHLDATTVLARALAAKGIYPAVDPLDSTSTMLQPSVVGDEHYKTARAVQSTLQRYKELQDIIAIL
GLDELSEEDRLTVDRARKIEKFLSQPFFVAEIFTGMSGKYVKLEETIAGFNMILSGELDDLPEQAFYLVGNIDEVKAKAE
KLKSEK
>Mature_486_residues
MVATPSTSSQTKGVVRQVIGPVLDVEFPAGKLPKILNALRIEAKNPAGQEIALTAEVQQLLGDHRVRAVAMSGTDGLVRG
MEAVDTGAPISVPVGEATLGRIFNVLGEPVDEQGPVKTKDTAPIHRAAPKLTDLETKPKVFETGIKVIDLLAPYRQGGKV
GLFGGAGVGKTVLIQELINNIAKEHGGVSVFGGVGERTREGNDLYEEFKESGVINADDLTQSKVALCFGQMNEPPGARMR
VGLSALTMAEHFRDVNKQDVLLFVDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVGELQERITSTLEGSITSIQAVY
VPADDLTDPAPATTFAHLDATTVLARALAAKGIYPAVDPLDSTSTMLQPSVVGDEHYKTARAVQSTLQRYKELQDIIAIL
GLDELSEEDRLTVDRARKIEKFLSQPFFVAEIFTGMSGKYVKLEETIAGFNMILSGELDDLPEQAFYLVGNIDEVKAKAE
KLKSEK

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=482, Percent_Identity=68.0497925311203, Blast_Score=655, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=302, Percent_Identity=29.1390728476821, Blast_Score=110, Evalue=4e-24,
Organism=Homo sapiens, GI19913426, Length=390, Percent_Identity=26.1538461538462, Blast_Score=104, Evalue=2e-22,
Organism=Homo sapiens, GI19913428, Length=364, Percent_Identity=26.0989010989011, Blast_Score=102, Evalue=8e-22,
Organism=Homo sapiens, GI50345984, Length=411, Percent_Identity=25.5474452554745, Blast_Score=83, Evalue=6e-16,
Organism=Homo sapiens, GI4757810, Length=411, Percent_Identity=25.5474452554745, Blast_Score=83, Evalue=6e-16,
Organism=Escherichia coli, GI1790170, Length=470, Percent_Identity=64.8936170212766, Blast_Score=601, Evalue=1e-173,
Organism=Escherichia coli, GI1788251, Length=348, Percent_Identity=30.1724137931034, Blast_Score=125, Evalue=7e-30,
Organism=Escherichia coli, GI1790172, Length=393, Percent_Identity=23.9185750636132, Blast_Score=95, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI25144756, Length=484, Percent_Identity=65.2892561983471, Blast_Score=635, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17570191, Length=434, Percent_Identity=25.8064516129032, Blast_Score=111, Evalue=9e-25,
Organism=Caenorhabditis elegans, GI17510931, Length=398, Percent_Identity=26.1306532663317, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17565854, Length=302, Percent_Identity=28.476821192053, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI71988080, Length=306, Percent_Identity=24.8366013071895, Blast_Score=84, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71988063, Length=306, Percent_Identity=24.8366013071895, Blast_Score=84, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6322581, Length=475, Percent_Identity=66.5263157894737, Blast_Score=639, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=395, Percent_Identity=26.5822784810127, Blast_Score=108, Evalue=2e-24,
Organism=Saccharomyces cerevisiae, GI6319370, Length=393, Percent_Identity=25.1908396946565, Blast_Score=83, Evalue=8e-17,
Organism=Saccharomyces cerevisiae, GI6320016, Length=254, Percent_Identity=25.9842519685039, Blast_Score=73, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24638766, Length=474, Percent_Identity=66.6666666666667, Blast_Score=636, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=475, Percent_Identity=66.9473684210526, Blast_Score=623, Evalue=1e-179,
Organism=Drosophila melanogaster, GI20129479, Length=399, Percent_Identity=26.8170426065163, Blast_Score=115, Evalue=5e-26,
Organism=Drosophila melanogaster, GI24583992, Length=322, Percent_Identity=28.5714285714286, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI281361666, Length=430, Percent_Identity=26.5116279069767, Blast_Score=112, Evalue=6e-25,
Organism=Drosophila melanogaster, GI24646341, Length=430, Percent_Identity=26.5116279069767, Blast_Score=112, Evalue=6e-25,
Organism=Drosophila melanogaster, GI17136796, Length=430, Percent_Identity=26.5116279069767, Blast_Score=112, Evalue=6e-25,
Organism=Drosophila melanogaster, GI24583988, Length=302, Percent_Identity=29.1390728476821, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24583986, Length=302, Percent_Identity=29.1390728476821, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24583984, Length=302, Percent_Identity=29.1390728476821, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24638768, Length=97, Percent_Identity=50.5154639175258, Blast_Score=89, Evalue=6e-18,
Organism=Drosophila melanogaster, GI24658560, Length=400, Percent_Identity=24.5, Blast_Score=84, Evalue=2e-16,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 52199; Mature: 52199

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVATPSTSSQTKGVVRQVIGPVLDVEFPAGKLPKILNALRIEAKNPAGQEIALTAEVQQL
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEHHHHHHH
LGDHRVRAVAMSGTDGLVRGMEAVDTGAPISVPVGEATLGRIFNVLGEPVDEQGPVKTKD
HCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
TAPIHRAAPKLTDLETKPKVFETGIKVIDLLAPYRQGGKVGLFGGAGVGKTVLIQELINN
CCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHH
IAKEHGGVSVFGGVGERTREGNDLYEEFKESGVINADDLTQSKVALCFGQMNEPPGARMR
HHHHCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCEE
VGLSALTMAEHFRDVNKQDVLLFVDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVGE
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCHHH
LQERITSTLEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLARALAAKGIYPAVDPL
HHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
DSTSTMLQPSVVGDEHYKTARAVQSTLQRYKELQDIIAILGLDELSEEDRLTVDRARKIE
CCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCHHHHHHHHHH
KFLSQPFFVAEIFTGMSGKYVKLEETIAGFNMILSGELDDLPEQAFYLVGNIDEVKAKAE
HHHCCCHHHHHHHHCCCCCEEEHHHHHHCHHEEEECCCCCCCHHHEEHHCCHHHHHHHHH
KLKSEK
HHCCCC
>Mature Secondary Structure
MVATPSTSSQTKGVVRQVIGPVLDVEFPAGKLPKILNALRIEAKNPAGQEIALTAEVQQL
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEHHHHHHH
LGDHRVRAVAMSGTDGLVRGMEAVDTGAPISVPVGEATLGRIFNVLGEPVDEQGPVKTKD
HCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
TAPIHRAAPKLTDLETKPKVFETGIKVIDLLAPYRQGGKVGLFGGAGVGKTVLIQELINN
CCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHH
IAKEHGGVSVFGGVGERTREGNDLYEEFKESGVINADDLTQSKVALCFGQMNEPPGARMR
HHHHCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCEE
VGLSALTMAEHFRDVNKQDVLLFVDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVGE
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCHHH
LQERITSTLEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLARALAAKGIYPAVDPL
HHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
DSTSTMLQPSVVGDEHYKTARAVQSTLQRYKELQDIIAILGLDELSEEDRLTVDRARKIE
CCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCHHHHHHHHHH
KFLSQPFFVAEIFTGMSGKYVKLEETIAGFNMILSGELDDLPEQAFYLVGNIDEVKAKAE
HHHCCCHHHHHHHHCCCCCEEEHHHHHHCHHEEEECCCCCCCHHHEEHHCCHHHHHHHHH
KLKSEK
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA