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The map label for this gene is 78779838

Identifier: 78779838

GI number: 78779838

Start: 1365542

End: 1366333

Strand: Direct

Name: 78779838

Synonym: PMT9312_1454

Alternate gene names: NA

Gene position: 1365542-1366333 (Clockwise)

Preceding gene: 78779837

Following gene: 78779839

Centisome position: 79.89

GC content: 29.55

Gene sequence:

>792_bases
ATGATTGACTTAAAAGAAATCTTAATAAACTCAAACTACAAAGAAGAAACTGAGGAATTAATAAATATTGCTAACTTAGC
TTACAAACACTGGGAAACTTATTGGACTGGATTTAACTCAACTTATGTTTGCGAGGAGATTTCAAAAGATTTTGAAAATT
TAAATGATTTCAAATTTTTTGTTTATGGAGGATTCTCTTCCTCTCAAAGATCAAGAATAGCTTGCTTTAGAGGAGATAAC
ATTCCTGAAGAGGATGCACTAAAAAGTAATTTTCCAGCTCAAGGGATAAAAATTAATGGCAATTTTTTATTTGATAATGC
TACACAAGACGATTTTAGATCCCTCTTAATTGAAAATGGGGTACATAAAGTAAAAGTAGGCGATATATGGACTATTGGAG
ATAGGGGGGCACAAGGAATAATTGATAATTTAGATATTGAGCATCTAAATGAAAAGATTTTTTATTTGAGAGACGTAAAA
GTAAAAATTAATTTAGTTGGTATAGATGAATTACAAATACCTTCTGGAAGAACAAAAAAACTTGTTAATACAGTAGAAGC
TTCAACAAGATTAGATGCTATAGCTTCAGCAGGTTTTAGGATATCACGAACCAAAATCATTGAAAGGATAGAAAATGGAA
TGCTCAAATTAAATGGAAGCAAAGTTAACAAGCCAACTATTAATCTAAAAATTGGCGACAAACTAGAACTAGAAAATAAA
GGATTTATCGAAATTCTAAATTTAGAAATCACCAAAAGAGAAAGATGGAAAGTTAAATTACTTAGAAAATGA

Upstream 100 bases:

>100_bases
TAAATGGCTTGTAATGCTTGAAAATCAAATTGGAACTGAATTACCTTGGGCTTTGATAAAGCAATCAGAAGCAAAAGATA
TAATTTTTTTAGAAGGCTGA

Downstream 100 bases:

>100_bases
AACATAACCTGCTATTTTCTTATAAGGGGGATTTAATATTCTTCAATTTGGGCGATTAGCTCAGTGGTAGAGCACTACCT
CGACACGGTAGTGGCCACTG

Product: RNA-binding S4

Products: NA

Alternate protein names: S4 Domain-Containing Protein; S4-Like Domain-Containing Protein; Photosystem II S4 Domain-Containing Protein

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MIDLKEILINSNYKEETEELINIANLAYKHWETYWTGFNSTYVCEEISKDFENLNDFKFFVYGGFSSSQRSRIACFRGDN
IPEEDALKSNFPAQGIKINGNFLFDNATQDDFRSLLIENGVHKVKVGDIWTIGDRGAQGIIDNLDIEHLNEKIFYLRDVK
VKINLVGIDELQIPSGRTKKLVNTVEASTRLDAIASAGFRISRTKIIERIENGMLKLNGSKVNKPTINLKIGDKLELENK
GFIEILNLEITKRERWKVKLLRK

Sequences:

>Translated_263_residues
MIDLKEILINSNYKEETEELINIANLAYKHWETYWTGFNSTYVCEEISKDFENLNDFKFFVYGGFSSSQRSRIACFRGDN
IPEEDALKSNFPAQGIKINGNFLFDNATQDDFRSLLIENGVHKVKVGDIWTIGDRGAQGIIDNLDIEHLNEKIFYLRDVK
VKINLVGIDELQIPSGRTKKLVNTVEASTRLDAIASAGFRISRTKIIERIENGMLKLNGSKVNKPTINLKIGDKLELENK
GFIEILNLEITKRERWKVKLLRK
>Mature_263_residues
MIDLKEILINSNYKEETEELINIANLAYKHWETYWTGFNSTYVCEEISKDFENLNDFKFFVYGGFSSSQRSRIACFRGDN
IPEEDALKSNFPAQGIKINGNFLFDNATQDDFRSLLIENGVHKVKVGDIWTIGDRGAQGIIDNLDIEHLNEKIFYLRDVK
VKINLVGIDELQIPSGRTKKLVNTVEASTRLDAIASAGFRISRTKIIERIENGMLKLNGSKVNKPTINLKIGDKLELENK
GFIEILNLEITKRERWKVKLLRK

Specific function: Unknown

COG id: COG2302

COG function: function code S; Uncharacterized conserved protein, contains S4-like domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30193; Mature: 30193

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDLKEILINSNYKEETEELINIANLAYKHWETYWTGFNSTYVCEEISKDFENLNDFKFF
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCEEEE
VYGGFSSSQRSRIACFRGDNIPEEDALKSNFPAQGIKINGNFLFDNATQDDFRSLLIENG
EEECCCCCCCCEEEEEECCCCCHHHHHHCCCCCCCEEECCEEEECCCCHHHHHHHHHHCC
VHKVKVGDIWTIGDRGAQGIIDNLDIEHLNEKIFYLRDVKVKINLVGIDELQIPSGRTKK
CCEEEECCEEEECCCCCCCCCCCCCHHHHCCEEEEEEEEEEEEEEEECCEEECCCCCHHH
LVNTVEASTRLDAIASAGFRISRTKIIERIENGMLKLNGSKVNKPTINLKIGDKLELENK
HHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHCCEEEECCCCCCCCEEEEEECCEEEECCC
GFIEILNLEITKRERWKVKLLRK
CEEEEEEEEEECCCCEEEEEECC
>Mature Secondary Structure
MIDLKEILINSNYKEETEELINIANLAYKHWETYWTGFNSTYVCEEISKDFENLNDFKFF
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCEEEE
VYGGFSSSQRSRIACFRGDNIPEEDALKSNFPAQGIKINGNFLFDNATQDDFRSLLIENG
EEECCCCCCCCEEEEEECCCCCHHHHHHCCCCCCCEEECCEEEECCCCHHHHHHHHHHCC
VHKVKVGDIWTIGDRGAQGIIDNLDIEHLNEKIFYLRDVKVKINLVGIDELQIPSGRTKK
CCEEEECCEEEECCCCCCCCCCCCCHHHHCCEEEEEEEEEEEEEEEECCEEECCCCCHHH
LVNTVEASTRLDAIASAGFRISRTKIIERIENGMLKLNGSKVNKPTINLKIGDKLELENK
HHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHCCEEEECCCCCCCCEEEEEECCEEEECCC
GFIEILNLEITKRERWKVKLLRK
CEEEEEEEEEECCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA