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The map label for this gene is sodN [H]

Identifier: 78779774

GI number: 78779774

Start: 1305511

End: 1305984

Strand: Direct

Name: sodN [H]

Synonym: PMT9312_1390

Alternate gene names: 78779774

Gene position: 1305511-1305984 (Clockwise)

Preceding gene: 78779773

Following gene: 78779775

Centisome position: 76.38

GC content: 34.39

Gene sequence:

>474_bases
ATGTTAAGTAAATTCATCAATTCTTTTCTAGATAAAAAATCCCCAATGACAGTCCATGCTCACTGTGATGGTCCTTGTGG
TGTTTATGATCCAGCATCTACGAGAGTTGCTGCTGAAGCAGTTTTATCAATGACAAAAAAACTTATTGCACTAGAAGTTC
CTTCTAGTACTGATTCAGCAGAATGGGCTACATACAGTAATACATTTTCTAGATATGTTGCAGTTAAAGAAGAGCAAGCA
AAAGAAACAAAGAAAGAAATTCTAATTTTGTGGACAGATTACTTTAAACCAGTTCATTTAGAAACTTATCCGGACTTACA
TGAAACTATTTGGAAGGCGGCCAAATTATGCAGTGCATGCAAAGTTAATATTGATTTAGCTCAAGCTGAAGAACTCATGA
GTTATGTAGAAAAGATTCATAATATTTTCTGGGCTTCAAAAGGAAGATCAGACGCTTTTGTAAAAGCTAGTTAA

Upstream 100 bases:

>100_bases
TGAATTATTAAAAGTCAATTAAATTAAGTAAGAAAAGTATTTAAGACTTTTCAATTTAGTTAATCGCCAAGTAATATATA
TACAACACCAAATATTTGAA

Downstream 100 bases:

>100_bases
TCAGAATTATTTTCAAAAGTTTTTTTGATTTTATTTTATTTTTCATAGGTTTAAGAAAAACCGCGATAATAGCTGGTGAC
TCTATGTTGCCCTCCCTAAA

Product: putative nickel-containing superoxide dismutase precursor (NISOD)

Products: NA

Alternate protein names: NiSOD; Nickel-containing superoxide dismutase [H]

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MLSKFINSFLDKKSPMTVHAHCDGPCGVYDPASTRVAAEAVLSMTKKLIALEVPSSTDSAEWATYSNTFSRYVAVKEEQA
KETKKEILILWTDYFKPVHLETYPDLHETIWKAAKLCSACKVNIDLAQAEELMSYVEKIHNIFWASKGRSDAFVKAS

Sequences:

>Translated_157_residues
MLSKFINSFLDKKSPMTVHAHCDGPCGVYDPASTRVAAEAVLSMTKKLIALEVPSSTDSAEWATYSNTFSRYVAVKEEQA
KETKKEILILWTDYFKPVHLETYPDLHETIWKAAKLCSACKVNIDLAQAEELMSYVEKIHNIFWASKGRSDAFVKAS
>Mature_157_residues
MLSKFINSFLDKKSPMTVHAHCDGPCGVYDPASTRVAAEAVLSMTKKLIALEVPSSTDSAEWATYSNTFSRYVAVKEEQA
KETKKEILILWTDYFKPVHLETYPDLHETIWKAAKLCSACKVNIDLAQAEELMSYVEKIHNIFWASKGRSDAFVKAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nickel superoxide dismutase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014123 [H]

Pfam domain/function: PF09055 Sod_Ni [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 17654; Mature: 17654

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSKFINSFLDKKSPMTVHAHCDGPCGVYDPASTRVAAEAVLSMTKKLIALEVPSSTDSA
CHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCC
EWATYSNTFSRYVAVKEEQAKETKKEILILWTDYFKPVHLETYPDLHETIWKAAKLCSAC
CHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCEECCCCCCHHHHHHHHHHHHHHH
KVNIDLAQAEELMSYVEKIHNIFWASKGRSDAFVKAS
HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECC
>Mature Secondary Structure
MLSKFINSFLDKKSPMTVHAHCDGPCGVYDPASTRVAAEAVLSMTKKLIALEVPSSTDSA
CHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCC
EWATYSNTFSRYVAVKEEQAKETKKEILILWTDYFKPVHLETYPDLHETIWKAAKLCSAC
CHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCEECCCCCCHHHHHHHHHHHHHHH
KVNIDLAQAEELMSYVEKIHNIFWASKGRSDAFVKAS
HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9466266; 12000953; 8836134; 8898904 [H]