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The map label for this gene is psbC [H]

Identifier: 78779640

GI number: 78779640

Start: 1168885

End: 1170267

Strand: Direct

Name: psbC [H]

Synonym: PMT9312_1257

Alternate gene names: 78779640

Gene position: 1168885-1170267 (Clockwise)

Preceding gene: 78779639

Following gene: 78779642

Centisome position: 68.39

GC content: 41.29

Gene sequence:

>1383_bases
GTGGAAACGCCCTTTAATAATTTATTAAGAGCTCCAAACCAAAGTATTGAAGAGACTGGTTATGCCTGGTATGTAGGTAA
CGCTAGACTAATCAATTTATCTGGACGTTTATTAGGAGCTCACATCGCTCACGCTGGACTTATAGTCTTCTGGGCAGGAG
CAATGATGCTTTTTGAGGTTAATCATTTTACTTTTGATAAACCAATGTGGGAGCAAGGTCTAATTTGTATGCCACACGTA
GCAATGTTTGGTTATGGAATAGGACCTGGTGGTGAAGTTACTGATATCATGCCTTTCTTTCAGGCTGGCGTGGTTCATTT
AATAGCTTCTGCAGTGCTTGGCTTTGGTGGAATTTACCATTCATTAGCGGGTCCCGAGAAGCTTGAAGAAGCTTTCCCAT
TCTTCTCTACTGACTGGAGAGATAAAAATCAAATGACCAATATTCTTGGTTATCATTTGTGTGTTCTTGGTGTAGGTGCA
TTAGCATGGACTGTGAACTGGTGTTTCATTGGTGGTGCTTATGATACTTGGGCACCTGGTGGTGGTGAAGTCAGATTAGT
CAATCCAACATTAGATCCAAGGGTTATTCTTGGTTATCTATTTAGATCTCCATGGGGAGGCGCTGGTTCTATAATCGGTG
TTAACTCAATTGAAGATATTGTTGGTGGACATGTCTATGTGGGTGTAACTGCAATTATTGGAGGAATATTCCACATTTTT
ACCAAACCTTTTGGATGGGCTAGAAGAGCATTCATCTGGAACGGTGAAGGTCTATTAAGTTACGCTCTTGGTGGAATTTG
TGTAGCAAGTTTTATTGCATCAACATTCATCTGGTTTAACAATACTGCTTACCCATCTGAGTTCTATGGCCCTACAAACG
CCGAAGCTTCACAGGCCCAAAGCTTTACTTTCCTAGTGAGAGATCAAAGAATTGGAGCTAATGTAGGTACAACAATGGGA
CCAACAGGTTTAGGTAAGTATCTCATGAGATCTCCTACAGGTGAAATTATATTTGGTGGTGAAACAATGAGATTTTGGGA
TTTCAGAGGTCCATGGTTAGAGCCTTTAAGAGGGCCAAACGGATTGAGCCTTGAGAAAATCCAAAATGATATTCAGCCTT
GGCAAGTCAGAAGAGCTGCTGAATATATGACTCATGCTCCTAATGCTTCTATCAACTCTGTTGGTGGAATCATTACTGAG
CCTAATGCTGTTAACTTCGTTAATTTAAGACAATGGTTAGCTGCAGCTCAATTCTTCCTAGGATGGTTTACATTCATCGG
TCATCTTTGGCATGCAGGACGTGCTAGAGCTGCCGCTGCTGGTTTCGAAAAAGGAATCGACAGAAAGAGTGAACCAGCTC
TAGAAATGCCAGATTTAGATTAA

Upstream 100 bases:

>100_bases
TATACAAAAAATATACTTTTGAACGAAGGTATGCGAGCATGGATGTCTTCTGTGGATCAACCACACGAAAATTTTGTATT
CCCTGAGGAGGTTCTTCCAC

Downstream 100 bases:

>100_bases
TTTCTATTTCATATAAAAAAAAGCCCTATCAAAAGATAGGGTTTTTTTTTTGTTATATTTTTTGTTTAAGTAAATTTTTT
CTGAGCCATGGCAAACTTAA

Product: photosystem II PsbC protein (CP43)

Products: NA

Alternate protein names: PSII 43 kDa protein; Protein CP-43; Protein P6 [H]

Number of amino acids: Translated: 460; Mature: 460

Protein sequence:

>460_residues
METPFNNLLRAPNQSIEETGYAWYVGNARLINLSGRLLGAHIAHAGLIVFWAGAMMLFEVNHFTFDKPMWEQGLICMPHV
AMFGYGIGPGGEVTDIMPFFQAGVVHLIASAVLGFGGIYHSLAGPEKLEEAFPFFSTDWRDKNQMTNILGYHLCVLGVGA
LAWTVNWCFIGGAYDTWAPGGGEVRLVNPTLDPRVILGYLFRSPWGGAGSIIGVNSIEDIVGGHVYVGVTAIIGGIFHIF
TKPFGWARRAFIWNGEGLLSYALGGICVASFIASTFIWFNNTAYPSEFYGPTNAEASQAQSFTFLVRDQRIGANVGTTMG
PTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLSLEKIQNDIQPWQVRRAAEYMTHAPNASINSVGGIITE
PNAVNFVNLRQWLAAAQFFLGWFTFIGHLWHAGRARAAAAGFEKGIDRKSEPALEMPDLD

Sequences:

>Translated_460_residues
METPFNNLLRAPNQSIEETGYAWYVGNARLINLSGRLLGAHIAHAGLIVFWAGAMMLFEVNHFTFDKPMWEQGLICMPHV
AMFGYGIGPGGEVTDIMPFFQAGVVHLIASAVLGFGGIYHSLAGPEKLEEAFPFFSTDWRDKNQMTNILGYHLCVLGVGA
LAWTVNWCFIGGAYDTWAPGGGEVRLVNPTLDPRVILGYLFRSPWGGAGSIIGVNSIEDIVGGHVYVGVTAIIGGIFHIF
TKPFGWARRAFIWNGEGLLSYALGGICVASFIASTFIWFNNTAYPSEFYGPTNAEASQAQSFTFLVRDQRIGANVGTTMG
PTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLSLEKIQNDIQPWQVRRAAEYMTHAPNASINSVGGIITE
PNAVNFVNLRQWLAAAQFFLGWFTFIGHLWHAGRARAAAAGFEKGIDRKSEPALEMPDLD
>Mature_460_residues
METPFNNLLRAPNQSIEETGYAWYVGNARLINLSGRLLGAHIAHAGLIVFWAGAMMLFEVNHFTFDKPMWEQGLICMPHV
AMFGYGIGPGGEVTDIMPFFQAGVVHLIASAVLGFGGIYHSLAGPEKLEEAFPFFSTDWRDKNQMTNILGYHLCVLGVGA
LAWTVNWCFIGGAYDTWAPGGGEVRLVNPTLDPRVILGYLFRSPWGGAGSIIGVNSIEDIVGGHVYVGVTAIIGGIFHIF
TKPFGWARRAFIWNGEGLLSYALGGICVASFIASTFIWFNNTAYPSEFYGPTNAEASQAQSFTFLVRDQRIGANVGTTMG
PTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLSLEKIQNDIQPWQVRRAAEYMTHAPNASINSVGGIITE
PNAVNFVNLRQWLAAAQFFLGWFTFIGHLWHAGRARAAAAGFEKGIDRKSEPALEMPDLD

Specific function: The 43 kDa protein (p6) is a component of the core of photosystem II. It is a chlorophyll binding protein [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. PsbC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932
- InterPro:   IPR005869 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 50443; Mature: 50443

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METPFNNLLRAPNQSIEETGYAWYVGNARLINLSGRLLGAHIAHAGLIVFWAGAMMLFEV
CCCCHHHHHHCCCCCHHHCCCEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHEEEE
NHFTFDKPMWEQGLICMPHVAMFGYGIGPGGEVTDIMPFFQAGVVHLIASAVLGFGGIYH
CCCCCCCCHHHCCCEECCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLAGPEKLEEAFPFFSTDWRDKNQMTNILGYHLCVLGVGALAWTVNWCFIGGAYDTWAPG
HCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCC
GGEVRLVNPTLDPRVILGYLFRSPWGGAGSIIGVNSIEDIVGGHVYVGVTAIIGGIFHIF
CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEECCHHHHHHCCCHHHHHHHHHHHHHHHH
TKPFGWARRAFIWNGEGLLSYALGGICVASFIASTFIWFNNTAYPSEFYGPTNAEASQAQ
HCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHC
SFTFLVRDQRIGANVGTTMGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPN
CEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCEEEEEECCCCCHHHCCCCC
GLSLEKIQNDIQPWQVRRAAEYMTHAPNASINSVGGIITEPNAVNFVNLRQWLAAAQFFL
CCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHH
GWFTFIGHLWHAGRARAAAAGFEKGIDRKSEPALEMPDLD
HHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
METPFNNLLRAPNQSIEETGYAWYVGNARLINLSGRLLGAHIAHAGLIVFWAGAMMLFEV
CCCCHHHHHHCCCCCHHHCCCEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHEEEE
NHFTFDKPMWEQGLICMPHVAMFGYGIGPGGEVTDIMPFFQAGVVHLIASAVLGFGGIYH
CCCCCCCCHHHCCCEECCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLAGPEKLEEAFPFFSTDWRDKNQMTNILGYHLCVLGVGALAWTVNWCFIGGAYDTWAPG
HCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCC
GGEVRLVNPTLDPRVILGYLFRSPWGGAGSIIGVNSIEDIVGGHVYVGVTAIIGGIFHIF
CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEECCHHHHHHCCCHHHHHHHHHHHHHHHH
TKPFGWARRAFIWNGEGLLSYALGGICVASFIASTFIWFNNTAYPSEFYGPTNAEASQAQ
HCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHC
SFTFLVRDQRIGANVGTTMGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPN
CEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCEEEEEECCCCCHHHCCCCC
GLSLEKIQNDIQPWQVRRAAEYMTHAPNASINSVGGIITEPNAVNFVNLRQWLAAAQFFL
CCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHH
GWFTFIGHLWHAGRARAAAAGFEKGIDRKSEPALEMPDLD
HHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA