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The map label for this gene is ygaF [H]

Identifier: 78779281

GI number: 78779281

Start: 827960

End: 828493

Strand: Reverse

Name: ygaF [H]

Synonym: PMT9312_0897

Alternate gene names: 78779281

Gene position: 828493-827960 (Counterclockwise)

Preceding gene: 78779282

Following gene: 78779280

Centisome position: 48.47

GC content: 28.28

Gene sequence:

>534_bases
ATGAGAACTCTAGTTGTAAGTATATTAATATCATTTTTTCTTTTAATTAATTGTAATTCAACATTAGCTTTTGACTTTGC
TCCTGAAGTTGGGGATTCGGCTCCAAACTTTCAGTTAGAAGGTTTTAATAAAAACATAAAATCAAAAAAAATTTGGGAAT
TAAGTGATTTTCAAGGTAAATGGCTTGTTATATATTTTTATCCAAAGGATTTTACAGCAGGTTGTACTCTTGAAGCTAAA
GGTTTTTCAGAATTAAAAAAAGATTTTTCAAAATACAATGCCGAAATTATTGGTATTAGTGCTGATAAAAAAGATTCTCA
TGAAAGTTTCTGTAGCGAAAAATCAATAACCTACACTTTATTATCTGATCCTGAAGGAATTATTAGCGATAAATATGGTT
CGTGGATTCCACCATATTCAGATAGAAATACTTTTTTGATTTCTCCAGAAGGGACAATTTCTTATAGATGGATAAGTGTT
TTACCTATAAATCATGCTAAGGAAGTACTTAACGTACTAAAGAAAAAAATATAA

Upstream 100 bases:

>100_bases
ATATAAAAATTAGTACCAAAGCGCTAAAATCTGTACAAAAAGTAGGTTTAGATAAATTTGCCAAATCAAATGGAGTTGAT
TTAAAAAAATTCTAAATTTG

Downstream 100 bases:

>100_bases
TATTTTGCACGAACTATCATTTGGAACTTGGTTAATACATATCTCATCAGTAATTGAATGGATTTATGCAATATTTATAA
TTAAAAAAATTAGTAATTTT

Product: alkyl hydroperoxide reductase/thiol specific antioxidant/ Mal allergen

Products: NA

Alternate protein names: Bacterioferritin comigratory protein; Thioredoxin reductase [H]

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MRTLVVSILISFFLLINCNSTLAFDFAPEVGDSAPNFQLEGFNKNIKSKKIWELSDFQGKWLVIYFYPKDFTAGCTLEAK
GFSELKKDFSKYNAEIIGISADKKDSHESFCSEKSITYTLLSDPEGIISDKYGSWIPPYSDRNTFLISPEGTISYRWISV
LPINHAKEVLNVLKKKI

Sequences:

>Translated_177_residues
MRTLVVSILISFFLLINCNSTLAFDFAPEVGDSAPNFQLEGFNKNIKSKKIWELSDFQGKWLVIYFYPKDFTAGCTLEAK
GFSELKKDFSKYNAEIIGISADKKDSHESFCSEKSITYTLLSDPEGIISDKYGSWIPPYSDRNTFLISPEGTISYRWISV
LPINHAKEVLNVLKKKI
>Mature_177_residues
MRTLVVSILISFFLLINCNSTLAFDFAPEVGDSAPNFQLEGFNKNIKSKKIWELSDFQGKWLVIYFYPKDFTAGCTLEAK
GFSELKKDFSKYNAEIIGISADKKDSHESFCSEKSITYTLLSDPEGIISDKYGSWIPPYSDRNTFLISPEGTISYRWISV
LPINHAKEVLNVLKKKI

Specific function: Unknown

COG id: COG1225

COG function: function code O; Peroxiredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI5802974, Length=184, Percent_Identity=30.9782608695652, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI4505591, Length=156, Percent_Identity=30.1282051282051, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI32455266, Length=156, Percent_Identity=30.1282051282051, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI32455264, Length=156, Percent_Identity=30.1282051282051, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI32483377, Length=135, Percent_Identity=32.5925925925926, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI32189392, Length=160, Percent_Identity=28.125, Blast_Score=64, Evalue=7e-11,
Organism=Escherichia coli, GI1788825, Length=155, Percent_Identity=32.258064516129, Blast_Score=84, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17554494, Length=135, Percent_Identity=31.8518518518519, Blast_Score=66, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6322180, Length=154, Percent_Identity=33.7662337662338, Blast_Score=68, Evalue=9e-13,
Organism=Drosophila melanogaster, GI17738015, Length=170, Percent_Identity=34.7058823529412, Blast_Score=80, Evalue=8e-16,
Organism=Drosophila melanogaster, GI17157991, Length=157, Percent_Identity=31.2101910828025, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24641739, Length=157, Percent_Identity=31.2101910828025, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000866
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00578 AhpC-TSA [H]

EC number: =1.11.1.15 [H]

Molecular weight: Translated: 20114; Mature: 20114

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTLVVSILISFFLLINCNSTLAFDFAPEVGDSAPNFQLEGFNKNIKSKKIWELSDFQGK
CHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCC
WLVIYFYPKDFTAGCTLEAKGFSELKKDFSKYNAEIIGISADKKDSHESFCSEKSITYTL
EEEEEEECCCCCCCEEEECCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCCEEEEE
LSDPEGIISDKYGSWIPPYSDRNTFLISPEGTISYRWISVLPINHAKEVLNVLKKKI
ECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHCC
>Mature Secondary Structure
MRTLVVSILISFFLLINCNSTLAFDFAPEVGDSAPNFQLEGFNKNIKSKKIWELSDFQGK
CHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCC
WLVIYFYPKDFTAGCTLEAKGFSELKKDFSKYNAEIIGISADKKDSHESFCSEKSITYTL
EEEEEEECCCCCCCEEEECCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCCEEEEE
LSDPEGIISDKYGSWIPPYSDRNTFLISPEGTISYRWISVLPINHAKEVLNVLKKKI
ECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]