Click here to switch to the map view.

The map label for this gene is 78778769

Identifier: 78778769

GI number: 78778769

Start: 366211

End: 366819

Strand: Direct

Name: 78778769

Synonym: PMT9312_0384

Alternate gene names: NA

Gene position: 366211-366819 (Clockwise)

Preceding gene: 78778768

Following gene: 78778770

Centisome position: 21.43

GC content: 34.81

Gene sequence:

>609_bases
ATGTTAGTTGATTTTCAAAGACCTTCTTCCCATATTAAATATTTATCCTCATTAACCTCAAATGAGTGGATCGAACTAGC
ATTATCTAACCCAATAGATATTCTTATTGATCATGCTCATTGTGAGAGAAAAGCAGCAGGATTTGCTATTCAGTTGATGT
TTAGATATCCATCAGAATCAAATCTGGCAGAAGTTTTAAGTCCAATTGCGAGAGAGGAATTAGAGCATTTTGAAAAAATA
CTTTATTTTTTGAAGGATCTTGGACATAATCTTAAGGCTTTAAAACCGCCTCCTTATGGAGCTGAACTGGCTAAGAATAT
AAGAAAGGATGAACCCAATAGGATGCTCGATAGTTTCTTAATAGCAGGACTGATTGAAGCAAGAAGTCATGAAAGATTAA
GCTTACTTGCCCTGAATTCTGGAGAAGAATCTTTTAAAATCCTTTATGAATCTTTGCTTGAGAGTGAGGCAAGACACTTT
GGAGTTTATTGGAAACTAGCGCAAACTAAATTCTCTAAAAATGAAACTTTCAAAAGGTTAGAGGAATTGTCTAAATTTGA
GTCAGAAATACTCGCTGATACTTGTCTTATGCCAAGGGTTCATAGCTAG

Upstream 100 bases:

>100_bases
TCTTACAGATAAAGCTGTTGGAATAATTAGTGGATTTGGTATATCTAGTTATTCTCTAGCTCTAGATGGAATCATTGGAT
TTTTAAGTATAAAAGATTAA

Downstream 100 bases:

>100_bases
AAAAATTGAATTAAATTAAGAATGTTACTAAAAAAAATTTTAAGAGTATTTACAGAATATAAAAGTGAGGCGACATCATT
AACTATTGTTGGAGTTGGGC

Product: putative tRNA-(MS(2)IO(6)A)-hydroxylase

Products: NA

Alternate protein names: TRNA-(MS[2]IO[6]A)-Hydroxylase; TRNA-(Ms[2]Io[6]A)-Hydroxylase; TRNA-(Ms(2)Io(6)A)-Hydroxylase; TRNA-(MS[2]IO[6]A)-Hydroxylase Subfamily; TRNA-(MS(2)IO(6)A)-Hydroxylase-Like; TRNA-(MS[2]IO[6]A)-Hydroxylase-Like Protein; tRNA Hydroxylase; Probably TRNA-(MS[2]IO[6]A)-Hydroxylase; TRNA-(MS(2)IO(6)A)-Hydroxylase; Hydroxylase; TRNA-(MS 2)O6-A-Hydroxylase; tRNA Hydroxylase-Like Protein

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MLVDFQRPSSHIKYLSSLTSNEWIELALSNPIDILIDHAHCERKAAGFAIQLMFRYPSESNLAEVLSPIAREELEHFEKI
LYFLKDLGHNLKALKPPPYGAELAKNIRKDEPNRMLDSFLIAGLIEARSHERLSLLALNSGEESFKILYESLLESEARHF
GVYWKLAQTKFSKNETFKRLEELSKFESEILADTCLMPRVHS

Sequences:

>Translated_202_residues
MLVDFQRPSSHIKYLSSLTSNEWIELALSNPIDILIDHAHCERKAAGFAIQLMFRYPSESNLAEVLSPIAREELEHFEKI
LYFLKDLGHNLKALKPPPYGAELAKNIRKDEPNRMLDSFLIAGLIEARSHERLSLLALNSGEESFKILYESLLESEARHF
GVYWKLAQTKFSKNETFKRLEELSKFESEILADTCLMPRVHS
>Mature_202_residues
MLVDFQRPSSHIKYLSSLTSNEWIELALSNPIDILIDHAHCERKAAGFAIQLMFRYPSESNLAEVLSPIAREELEHFEKI
LYFLKDLGHNLKALKPPPYGAELAKNIRKDEPNRMLDSFLIAGLIEARSHERLSLLALNSGEESFKILYESLLESEARHF
GVYWKLAQTKFSKNETFKRLEELSKFESEILADTCLMPRVHS

Specific function: Unknown

COG id: COG4445

COG function: function code FJ; Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23277; Mature: 23277

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVDFQRPSSHIKYLSSLTSNEWIELALSNPIDILIDHAHCERKAAGFAIQLMFRYPSES
CCCCCCCCHHHHHHHHHHCCCHHEEEEECCCHHEEEEHHHHHHHHCCCEEEEEEECCCCC
NLAEVLSPIAREELEHFEKILYFLKDLGHNLKALKPPPYGAELAKNIRKDEPNRMLDSFL
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHH
IAGLIEARSHERLSLLALNSGEESFKILYESLLESEARHFGVYWKLAQTKFSKNETFKRL
HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
EELSKFESEILADTCLMPRVHS
HHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLVDFQRPSSHIKYLSSLTSNEWIELALSNPIDILIDHAHCERKAAGFAIQLMFRYPSES
CCCCCCCCHHHHHHHHHHCCCHHEEEEECCCHHEEEEHHHHHHHHCCCEEEEEEECCCCC
NLAEVLSPIAREELEHFEKILYFLKDLGHNLKALKPPPYGAELAKNIRKDEPNRMLDSFL
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHH
IAGLIEARSHERLSLLALNSGEESFKILYESLLESEARHFGVYWKLAQTKFSKNETFKRL
HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
EELSKFESEILADTCLMPRVHS
HHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA