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The map label for this gene is rimN [H]

Identifier: 78778710

GI number: 78778710

Start: 308840

End: 309421

Strand: Direct

Name: rimN [H]

Synonym: PMT9312_0325

Alternate gene names: 78778710

Gene position: 308840-309421 (Clockwise)

Preceding gene: 78778709

Following gene: 78778716

Centisome position: 18.07

GC content: 35.22

Gene sequence:

>582_bases
ATGAATTTAGTAGACTCTAAATCAGCTTTGAAGACTCTTACTAGTGGTTTACCTATAATTTTCCCAACAGATACCTTACC
TGCAATTGGATGCCTGCCAAAATTTTCAAATATTATTTATGATTATAAAAAAAGAGATAGAAATAAACCCTTGATTCTTA
TGGGATCTGAATATAAACAATTAATCGATTATGTTCACGAATCAGCTAAAGAAGATTACGAAAATATAGCTTCAAAATAT
TGGCCTGGAGCTCTGACAATGGTTATCCCATCTTCAGAAAAGCAGACTGGAATCCTCACAAGCAAGGATCTTACTCTTGG
TTTAAGAATCCCAAATTTTCATATGGCCCAATCTCTTTTGAAAGAAACAGGCCCTTTGTTAACTTCAAGTGCAAATATTT
CAGGCCTCACTGGATCTATTACAGCTGATGGTATTGCTTTAGACTTCCCTTCTGTAGAAATTCTAGAACCTATTCCATGG
GAAAAAAGTAGTGGCAAAGCCAGTACCATAATATTTTGGAAGAAAAGTGGCGATTGGAGGCTGATTAGAGAAGGAGAAGT
ATTAGTTAGGGAATTGCATTAA

Upstream 100 bases:

>100_bases
AGAATAAATTTACATCAATAGAAATTGTGAATGATCTTTCAGGTATTGGTAGGTTTACCATAGGAAGATATAAATAAAGT
ATTGCGGGTTCATAATTAAA

Downstream 100 bases:

>100_bases
TGTTTTTATTATTGTTTTTTGTTTTATTAATTCAATTTTTTACTTATTGGATCTTTGAACCTCTGGCCTCTTTTTTAGAG
TACGTTCTGGAAATAAGATT

Product: hypothetical protein

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN [H]

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MNLVDSKSALKTLTSGLPIIFPTDTLPAIGCLPKFSNIIYDYKKRDRNKPLILMGSEYKQLIDYVHESAKEDYENIASKY
WPGALTMVIPSSEKQTGILTSKDLTLGLRIPNFHMAQSLLKETGPLLTSSANISGLTGSITADGIALDFPSVEILEPIPW
EKSSGKASTIIFWKKSGDWRLIREGEVLVRELH

Sequences:

>Translated_193_residues
MNLVDSKSALKTLTSGLPIIFPTDTLPAIGCLPKFSNIIYDYKKRDRNKPLILMGSEYKQLIDYVHESAKEDYENIASKY
WPGALTMVIPSSEKQTGILTSKDLTLGLRIPNFHMAQSLLKETGPLLTSSANISGLTGSITADGIALDFPSVEILEPIPW
EKSSGKASTIIFWKKSGDWRLIREGEVLVRELH
>Mature_193_residues
MNLVDSKSALKTLTSGLPIIFPTDTLPAIGCLPKFSNIIYDYKKRDRNKPLILMGSEYKQLIDYVHESAKEDYENIASKY
WPGALTMVIPSSEKQTGILTSKDLTLGLRIPNFHMAQSLLKETGPLLTSSANISGLTGSITADGIALDFPSVEILEPIPW
EKSSGKASTIIFWKKSGDWRLIREGEVLVRELH

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine [H]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI2367210, Length=148, Percent_Identity=30.4054054054054, Blast_Score=68, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 21409; Mature: 21409

Theoretical pI: Translated: 7.59; Mature: 7.59

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLVDSKSALKTLTSGLPIIFPTDTLPAIGCLPKFSNIIYDYKKRDRNKPLILMGSEYKQ
CCCCCHHHHHHHHHCCCCEEEECCCCCHHHCCHHHHHHHHHHHHCCCCCCEEEECHHHHH
LIDYVHESAKEDYENIASKYWPGALTMVIPSSEKQTGILTSKDLTLGLRIPNFHMAQSLL
HHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEECCCEEEEECCCHHHHHHHH
KETGPLLTSSANISGLTGSITADGIALDFPSVEILEPIPWEKSSGKASTIIFWKKSGDWR
HHCCCCEECCCCCCCCCCCEEECCEEEECCCHHEECCCCCCCCCCCEEEEEEEEECCCEE
LIREGEVLVRELH
EEECCCEEEEECC
>Mature Secondary Structure
MNLVDSKSALKTLTSGLPIIFPTDTLPAIGCLPKFSNIIYDYKKRDRNKPLILMGSEYKQ
CCCCCHHHHHHHHHCCCCEEEECCCCCHHHCCHHHHHHHHHHHHCCCCCCEEEECHHHHH
LIDYVHESAKEDYENIASKYWPGALTMVIPSSEKQTGILTSKDLTLGLRIPNFHMAQSLL
HHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEECCCEEEEECCCHHHHHHHH
KETGPLLTSSANISGLTGSITADGIALDFPSVEILEPIPWEKSSGKASTIIFWKKSGDWR
HHCCCCEECCCCCCCCCCCEEECCEEEECCCHHEECCCCCCCCCCCEEEEEEEEECCCEE
LIREGEVLVRELH
EEECCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA