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The map label for this gene is hslR [H]

Identifier: 78484362

GI number: 78484362

Start: 20441

End: 20818

Strand: Reverse

Name: hslR [H]

Synonym: Tcr_0016

Alternate gene names: 78484362

Gene position: 20818-20441 (Counterclockwise)

Preceding gene: 78484363

Following gene: 78484360

Centisome position: 0.86

GC content: 46.83

Gene sequence:

>378_bases
ATGGATAGAGTCCGTATCGATAAATGGTTATGGGCCGCGCGATTTTTTAAAACCCGCGGTGTGGCACTGGATGCTGTGAA
AGGTGGAAAGGTTGAACTTAATGGATCCAAACCGAAGCCGAGCAAACAGATTTGTGAGGGGGATAAACTGAAAATTACCC
AGCCGCATCGTAAAGTCGAAGTGACGGTCATTGGCATTACTGACAAACGGGGTTCTGCTGAAGCGGCTGAAACGCTTTAT
CAGCTGGATGTTGAAGTTTTGAACCAAAAAACGCCATCGCCCTTATTGGCGTTGGCCGGATATCGAGAAAAGGGCAAAGG
TCGTCCAACCAAGCGAGACCGTCGAAAAATTGAACAACTGTCTTTTAACGAAGAGTAA

Upstream 100 bases:

>100_bases
TACCATCCAGAGCCGGGTACAGAAGAAGCTAAAGTGTATGATTATCTTTCGCCTAGGGATTGGTTAGCTGACTTCAACGA
TCGTTAAACAGGACAGATTG

Downstream 100 bases:

>100_bases
ATGTTTTTATTGAGAAATTAATCTATTCTATTATTCCAATCCTTGTATGGTTTCATCTGACGTATAGAAATTCCATGTCA
CAGTCATACCAAAGGTTTCG

Product: RNA-binding S4

Products: NA

Alternate protein names: HSP15 [H]

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MDRVRIDKWLWAARFFKTRGVALDAVKGGKVELNGSKPKPSKQICEGDKLKITQPHRKVEVTVIGITDKRGSAEAAETLY
QLDVEVLNQKTPSPLLALAGYREKGKGRPTKRDRRKIEQLSFNEE

Sequences:

>Translated_125_residues
MDRVRIDKWLWAARFFKTRGVALDAVKGGKVELNGSKPKPSKQICEGDKLKITQPHRKVEVTVIGITDKRGSAEAAETLY
QLDVEVLNQKTPSPLLALAGYREKGKGRPTKRDRRKIEQLSFNEE
>Mature_125_residues
MDRVRIDKWLWAARFFKTRGVALDAVKGGKVELNGSKPKPSKQICEGDKLKITQPHRKVEVTVIGITDKRGSAEAAETLY
QLDVEVLNQKTPSPLLALAGYREKGKGRPTKRDRRKIEQLSFNEE

Specific function: May play a important role in binding of nucleic acid. More specific for RNA [H]

COG id: COG1188

COG function: function code J; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789803, Length=87, Percent_Identity=42.5287356321839, Blast_Score=74, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 14131; Mature: 14131

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRVRIDKWLWAARFFKTRGVALDAVKGGKVELNGSKPKPSKQICEGDKLKITQPHRKVE
CCCCHHHHHHHHHHHHHHCCCEEECCCCCEEEECCCCCCCCHHHCCCCCEEEECCCCEEE
VTVIGITDKRGSAEAAETLYQLDVEVLNQKTPSPLLALAGYREKGKGRPTKRDRRKIEQL
EEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHC
SFNEE
CCCCC
>Mature Secondary Structure
MDRVRIDKWLWAARFFKTRGVALDAVKGGKVELNGSKPKPSKQICEGDKLKITQPHRKVE
CCCCHHHHHHHHHHHHHHCCCEEECCCCCEEEECCCCCCCCHHHCCCCCEEEECCCCEEE
VTVIGITDKRGSAEAAETLYQLDVEVLNQKTPSPLLALAGYREKGKGRPTKRDRRKIEQL
EEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHC
SFNEE
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9286976 [H]