| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is 78358426
Identifier: 78358426
GI number: 78358426
Start: 3351086
End: 3353287
Strand: Direct
Name: 78358426
Synonym: Dde_3386
Alternate gene names: NA
Gene position: 3351086-3353287 (Clockwise)
Preceding gene: 78358425
Following gene: 78358427
Centisome position: 89.84
GC content: 61.22
Gene sequence:
>2202_bases ATGGAAGTCTTCGACGTCTTCGCCACATTCAGCCTGATGGACAACATCTCCGGCCCGCTCAAGCGGGTTCGGGATTCATT CCGCGCCACCCGCTCGGAAGGGTCGTCGCTGTCTCAGTCCATGGGCAACCTGACCAAGAAGCTGCTGCCTTTAGCGTTAG CCGCCGGGGTGGTGTTAGGGGCCTTTGCCCCTGCTATCGGTGTTGCGGCAGAGTTTGAGGCGGCCATATCCGGCCTTGGG GCAATCAGTCGGGCGAGCGCCTCCGATATGCAGCTGATGCAGCGGTCAGCTCTTGACCTGGGGGCCAGCACAGCCTTCTC CGCGGCCCAGGTTGTGGAAGCGCAGACGGAGCTGGCCAAGAAGGGCTTTACTGCTAACAAGATTGTCGGAGCCATGCCCG GCCTGCTTGATCTGGCGGCAGCAGCGCAGACCGATCTTGCCACAGCGGCCACGGTCACGTCCGGTGCGCTCAACTCGTTT CAGATGGACGCGGCCAAGGCCGGAAAGGTGGCGGACATAATCGCCGCCGCATCCACCACAAGTGCCACGGATGTGGAAGG GCTAGGCATGGCCCTTCAGAACGCCGGTGCCATTGTCGCCAGTTCAGGAGAGGATTTTGCGCTGCTAGCTGCCATAACCG GCAAACTGGCAGATGCCAACATCAACGCTGCCGTGGCGGGCACCGCAACCAAGATCATGTTTACCCGCCTTGCCGCCCCC ACCGGCGAAGCCGCCACCGCATTGCAGAAGCTGGGCATCAACACCCGCGATGCACAGGGCAACATGCTTCCCTTCCTGTC TGTAATGGGGAACCTTGAAAGCGCATTGGCGGGTATGGGAACCGGCGAAAAGGCCGAGTACCTCAAGAAGATTTTTGGGG AAGAAGCAGTCGGTTCCGTTACCGCCTTGCTGAGCAAGGGCGTAACCAGCCTTGGAAACTATGCGGACTCCCTGCGTTCC AGTGCCGGTGCTGCAGCCGAGATGGCAAGCAGGCAGTTGGATAACCTCAAGGGCTCCATCACCATTCTCGGTTCCGGCTG GGAGGGGCTGTCCATCAGCATTGGTTCAGTATTCACCCCGGCGCTTACAATTGCCGTCCGGGCTGTCACTACCCTTGTCG GCTGGCTCAACCGACTCGCCTCACACCCCGTCGGCAAAGCGGTGCTGGCCGTGGCCGGTGGCTTGGCCGCCGTCATCGTG GCCGTCACGCTGTTCAGCGCTGCTACATGGGCCGCAACCGCTGCCATGGGCGCACTCAATATTGCCATGCTGGCCAACCC GGTGGGCTTACTCGTAGCCGGACTCATCGCAGGGGCCGTCCTCGTTATCGCATACTGGGAAGAACTCAAAGGTACTTTTT CCGGCATCGGAGCCTTCTTCGCGCCCGCGCTGGCAAGGGTTCGTGCTTTTGCTCATGTATTCTCCGGCGAACTGGGAGCC TCCTTCATACAGCTGGGCGACGCACTTGGGGAAGTGTGGAAAGCTATGGCGGACTCTTTCGGCATGGTGGGTGATGCCCT TGCCGAAGTCTTCAGCCTGCTTGGTTCCGAAGGGGATGAAAATATCTCTTTCTGGCGCACGCTGGGCGAAATCGTCGGCG TGGTCGTGGGCGGGGCATTCAGAATGCTGGCTGCGGCCGTTCGTATGGCCGTCGTCCCCATCAAGATGGTCACCGGCGTC ATAAGCACCATGATCAGCTACTTCAAAGGCGATATTTCTCTATACGAGTCGGGCCGCAGGCTCATCGGCACCTTTGTGGA CGGCATTACCTCCATGGCCAGGGCTCCGTTTGAAGCGGTCTCCTCCATCCTTGGCCGGGTGCGTAATCTGTTGCCGTTTT CAGATGCCAGGGAAGGCCCGCTGTCTCAGCTCACACTCTCTGGCCAGAAGGTCATGGATACGCTGGGTGAAGGCATCACA GGTGCCGCACCGCGGTTGCGGGCCACGGCGGTAGATGCGCTTTCCGGCGTGGCTATTGTCACCGGGCAGGCCCCTAATAC CGCAGCTGCCAACGCCAAGGGAGCGCAAGCCGGTCCGAGGCGTGAGCAGGCCAGCCGTGAGAGCGGCCGTGTCGTAATCC AGCATCTGTCCGTAACCCTGCCCGGTGTGAAGGACGGGGAAGGCTTCGTGGCGGCGCTGCAACGTCTCGTGGCGGAATTC GACGGTTCCGCGTCCGGACTCAGCCAGGTGAAGGAGGCATAG
Upstream 100 bases:
>100_bases GAGCAGATAGCCAGAGCGCTGGAACTGGAAGCACGCATTCTGCGGCAGCAGGGAGCCGTCACCGCCAACCTGATCGCCAC CCTTATGGGAGCCAAGTAAC
Downstream 100 bases:
>100_bases CATGGATGGCCTGCTGACCTTCGAGCACGGCGAGATCCGCCTCGGCGATACCCTCGTGCCGGGTGTCCTGCAACGCCTGA GTGTTGGCGGCAGAGTCCGG
Product: Phage tail tape measure protein TP901, core region
Products: NA
Alternate protein names: Phage-Related Tail Protein; Tail Tape Measure Protein; Phage Protein; Tail Length Tape Measure Protein; Phage Related Protein; Phage Tail Tape Measure Protein Family Core Region; Phage Tail Tape Measure Core Region; Phage Tail Fiber Protein; Phage Tail Tape Measure Protein Core Region; Phage-Like Protein; Truncated PhiSLT; Bacteriophage-Related Protein; Bacteriophage Tape Measure Protein; Phage Tail Length Tape-Measure Protein; Tape Measure Protein; Prophage Tail Length Determinator; Phage Minor Tail Protein; Tail Fiber Protein T; Phage Tail Like Protein; Bacteriophage P2 Tail Protein GpT; Phage Tail Tape Measure Protein Family; Bacteriophage Tail Fiber Protein T; Phage Protein Tail Length Tape Measure Protein; Tail Protein; Phage Tail Protein; Phage Tail Tape Measure Protein Core Region
Number of amino acids: Translated: 733; Mature: 733
Protein sequence:
>733_residues MEVFDVFATFSLMDNISGPLKRVRDSFRATRSEGSSLSQSMGNLTKKLLPLALAAGVVLGAFAPAIGVAAEFEAAISGLG AISRASASDMQLMQRSALDLGASTAFSAAQVVEAQTELAKKGFTANKIVGAMPGLLDLAAAAQTDLATAATVTSGALNSF QMDAAKAGKVADIIAAASTTSATDVEGLGMALQNAGAIVASSGEDFALLAAITGKLADANINAAVAGTATKIMFTRLAAP TGEAATALQKLGINTRDAQGNMLPFLSVMGNLESALAGMGTGEKAEYLKKIFGEEAVGSVTALLSKGVTSLGNYADSLRS SAGAAAEMASRQLDNLKGSITILGSGWEGLSISIGSVFTPALTIAVRAVTTLVGWLNRLASHPVGKAVLAVAGGLAAVIV AVTLFSAATWAATAAMGALNIAMLANPVGLLVAGLIAGAVLVIAYWEELKGTFSGIGAFFAPALARVRAFAHVFSGELGA SFIQLGDALGEVWKAMADSFGMVGDALAEVFSLLGSEGDENISFWRTLGEIVGVVVGGAFRMLAAAVRMAVVPIKMVTGV ISTMISYFKGDISLYESGRRLIGTFVDGITSMARAPFEAVSSILGRVRNLLPFSDAREGPLSQLTLSGQKVMDTLGEGIT GAAPRLRATAVDALSGVAIVTGQAPNTAAANAKGAQAGPRREQASRESGRVVIQHLSVTLPGVKDGEGFVAALQRLVAEF DGSASGLSQVKEA
Sequences:
>Translated_733_residues MEVFDVFATFSLMDNISGPLKRVRDSFRATRSEGSSLSQSMGNLTKKLLPLALAAGVVLGAFAPAIGVAAEFEAAISGLG AISRASASDMQLMQRSALDLGASTAFSAAQVVEAQTELAKKGFTANKIVGAMPGLLDLAAAAQTDLATAATVTSGALNSF QMDAAKAGKVADIIAAASTTSATDVEGLGMALQNAGAIVASSGEDFALLAAITGKLADANINAAVAGTATKIMFTRLAAP TGEAATALQKLGINTRDAQGNMLPFLSVMGNLESALAGMGTGEKAEYLKKIFGEEAVGSVTALLSKGVTSLGNYADSLRS SAGAAAEMASRQLDNLKGSITILGSGWEGLSISIGSVFTPALTIAVRAVTTLVGWLNRLASHPVGKAVLAVAGGLAAVIV AVTLFSAATWAATAAMGALNIAMLANPVGLLVAGLIAGAVLVIAYWEELKGTFSGIGAFFAPALARVRAFAHVFSGELGA SFIQLGDALGEVWKAMADSFGMVGDALAEVFSLLGSEGDENISFWRTLGEIVGVVVGGAFRMLAAAVRMAVVPIKMVTGV ISTMISYFKGDISLYESGRRLIGTFVDGITSMARAPFEAVSSILGRVRNLLPFSDAREGPLSQLTLSGQKVMDTLGEGIT GAAPRLRATAVDALSGVAIVTGQAPNTAAANAKGAQAGPRREQASRESGRVVIQHLSVTLPGVKDGEGFVAALQRLVAEF DGSASGLSQVKEA >Mature_733_residues MEVFDVFATFSLMDNISGPLKRVRDSFRATRSEGSSLSQSMGNLTKKLLPLALAAGVVLGAFAPAIGVAAEFEAAISGLG AISRASASDMQLMQRSALDLGASTAFSAAQVVEAQTELAKKGFTANKIVGAMPGLLDLAAAAQTDLATAATVTSGALNSF QMDAAKAGKVADIIAAASTTSATDVEGLGMALQNAGAIVASSGEDFALLAAITGKLADANINAAVAGTATKIMFTRLAAP TGEAATALQKLGINTRDAQGNMLPFLSVMGNLESALAGMGTGEKAEYLKKIFGEEAVGSVTALLSKGVTSLGNYADSLRS SAGAAAEMASRQLDNLKGSITILGSGWEGLSISIGSVFTPALTIAVRAVTTLVGWLNRLASHPVGKAVLAVAGGLAAVIV AVTLFSAATWAATAAMGALNIAMLANPVGLLVAGLIAGAVLVIAYWEELKGTFSGIGAFFAPALARVRAFAHVFSGELGA SFIQLGDALGEVWKAMADSFGMVGDALAEVFSLLGSEGDENISFWRTLGEIVGVVVGGAFRMLAAAVRMAVVPIKMVTGV ISTMISYFKGDISLYESGRRLIGTFVDGITSMARAPFEAVSSILGRVRNLLPFSDAREGPLSQLTLSGQKVMDTLGEGIT GAAPRLRATAVDALSGVAIVTGQAPNTAAANAKGAQAGPRREQASRESGRVVIQHLSVTLPGVKDGEGFVAALQRLVAEF DGSASGLSQVKEA
Specific function: Unknown
COG id: COG5283
COG function: function code S; Phage-related tail protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 74361; Mature: 74361
Theoretical pI: Translated: 5.65; Mature: 5.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEVFDVFATFSLMDNISGPLKRVRDSFRATRSEGSSLSQSMGNLTKKLLPLALAAGVVLG CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH AFAPAIGVAAEFEAAISGLGAISRASASDMQLMQRSALDLGASTAFSAAQVVEAQTELAK HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH KGFTANKIVGAMPGLLDLAAAAQTDLATAATVTSGALNSFQMDAAKAGKVADIIAAASTT CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC SATDVEGLGMALQNAGAIVASSGEDFALLAAITGKLADANINAAVAGTATKIMFTRLAAP CCCCHHHHHHHHHCCCEEEECCCCCEEEHHHHHHHHCCCCCCEEEHHHHHHHHHHHHCCC TGEAATALQKLGINTRDAQGNMLPFLSVMGNLESALAGMGTGEKAEYLKKIFGEEAVGSV CCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHH TALLSKGVTSLGNYADSLRSSAGAAAEMASRQLDNLKGSITILGSGWEGLSISIGSVFTP HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCCCCEEEHHHHHHH ALTIAVRAVTTLVGWLNRLASHPVGKAVLAVAGGLAAVIVAVTLFSAATWAATAAMGALN HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IAMLANPVGLLVAGLIAGAVLVIAYWEELKGTFSGIGAFFAPALARVRAFAHVFSGELGA HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH SFIQLGDALGEVWKAMADSFGMVGDALAEVFSLLGSEGDENISFWRTLGEIVGVVVGGAF HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH RMLAAAVRMAVVPIKMVTGVISTMISYFKGDISLYESGRRLIGTFVDGITSMARAPFEAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHCCHHHH SSILGRVRNLLPFSDAREGPLSQLTLSGQKVMDTLGEGITGAAPRLRATAVDALSGVAIV HHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEE TGQAPNTAAANAKGAQAGPRREQASRESGRVVIQHLSVTLPGVKDGEGFVAALQRLVAEF ECCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEHHEECCCCCCCCHHHHHHHHHHHHH DGSASGLSQVKEA CCCHHHHHHHHCC >Mature Secondary Structure MEVFDVFATFSLMDNISGPLKRVRDSFRATRSEGSSLSQSMGNLTKKLLPLALAAGVVLG CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH AFAPAIGVAAEFEAAISGLGAISRASASDMQLMQRSALDLGASTAFSAAQVVEAQTELAK HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH KGFTANKIVGAMPGLLDLAAAAQTDLATAATVTSGALNSFQMDAAKAGKVADIIAAASTT CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC SATDVEGLGMALQNAGAIVASSGEDFALLAAITGKLADANINAAVAGTATKIMFTRLAAP CCCCHHHHHHHHHCCCEEEECCCCCEEEHHHHHHHHCCCCCCEEEHHHHHHHHHHHHCCC TGEAATALQKLGINTRDAQGNMLPFLSVMGNLESALAGMGTGEKAEYLKKIFGEEAVGSV CCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHH TALLSKGVTSLGNYADSLRSSAGAAAEMASRQLDNLKGSITILGSGWEGLSISIGSVFTP HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCCCCEEEHHHHHHH ALTIAVRAVTTLVGWLNRLASHPVGKAVLAVAGGLAAVIVAVTLFSAATWAATAAMGALN HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IAMLANPVGLLVAGLIAGAVLVIAYWEELKGTFSGIGAFFAPALARVRAFAHVFSGELGA HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH SFIQLGDALGEVWKAMADSFGMVGDALAEVFSLLGSEGDENISFWRTLGEIVGVVVGGAF HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH RMLAAAVRMAVVPIKMVTGVISTMISYFKGDISLYESGRRLIGTFVDGITSMARAPFEAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHCCHHHH SSILGRVRNLLPFSDAREGPLSQLTLSGQKVMDTLGEGITGAAPRLRATAVDALSGVAIV HHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEE TGQAPNTAAANAKGAQAGPRREQASRESGRVVIQHLSVTLPGVKDGEGFVAALQRLVAEF ECCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEHHEECCCCCCCCHHHHHHHHHHHHH DGSASGLSQVKEA CCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA