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The map label for this gene is rpfG [H]

Identifier: 78358154

GI number: 78358154

Start: 3105350

End: 3106921

Strand: Direct

Name: rpfG [H]

Synonym: Dde_3114

Alternate gene names: 78358154

Gene position: 3105350-3106921 (Clockwise)

Preceding gene: 78358153

Following gene: 78358155

Centisome position: 83.25

GC content: 56.68

Gene sequence:

>1572_bases
ATGTCACCAGCCCATATCGCAACGTCTGCTGACGACGAACTGATATTCGCCGAAGAAGAACCTGTACAGGAATCCGCGGC
GGCGGACGCACACTGGACCCTGCTTATCGTAGACGATGAGGAGGACGTGCACACCACCACCCGGCTGGTGCTGGAGGATT
TCACATTCGACGGCATTCCCCTGCGCTGCATCAGTGCCTACACGGGCGCGCAGGCCATGGAAATTCTGCGCACGGAAAAA
GACATAGCCGTGGTGCTGCTGGATGTGGTGATGGAAAGCAACCATGCCGGTCTGCATGTGGCAAGAGCCATACGCGAAGA
ACTGGACAACAGACTGGTGCGCATCATCCTGCGCACGGGACAGCCCGGACAGGCGCCGGAACGCAAGGTGATCATCAGCT
ATGACATAAACGACTACAAGCACAAGGCGGAGCTTACCTCGCAGCGGCTCTTTACCACCGTATATACTGCGCTGCGTTCG
TACCGTGACCTGCGGGTCATTGAACAGAACAGACAGGGACTGCGCCATATCATCGACGCATCGGCCGATCTTTTCCGCAT
CCGCTCCATCCGCCAGCTTGCGCAGGGGGTGCTCACACAGCTTTCTTCATTGTACGGACTGTTCTCCGGCTCAGTGTATG
TGCAGACATCGGGGTTCACCGCCACAAGCGAAAATCATGAATCGCTGCAGTTTATTGCGGCCACGGGCAAATACGACGCC
CTGCAGACGGACGAGGGCTGCCCGCAGCTTTCATCGGACGTGCGTGCCGCAGTGCAGCAGGCCGTGGAGGAAAAACGCAG
CATATTCAACGGACGCGACTATGTGGGCTATTTTCCGGCACGCAACGGCAGAGAGCATCTTATCTATCTGGAAGGGCTGA
GCGGTGTCACCCCGCCGGATGAAAATCTGCTGCAGGTGTTTACCAACAACGTGGCAGTGGCATTCGACAACGTCTATCTG
AATAAAGAAATCATCAACACGCAGAAGGAAGTCATTCTGCGGCTGGGCGATGTGGTGGAAAGCCGCTCCAAGGAAACGGC
ACACCATGTGCGCCGCGTTGCGGAATTCACCAGACTGCTGGCCCGCGCCGCCGGACTGGGAGAAGAAACCGCGGAACTGT
ATCTGCATGCTTCGCCCATGCATGATGTGGGCAAGATAGGCATTCCCGACGCCATACTGCTCAAACCCGGCAGGCTTACC
GATGAGGAACGCGAGGTGATGAAAACCCACACCACCATCGGCTACCATATTCTGAATACTTCGGAACGCCCCATCATGCA
GGCGGCGGCCATCATAGCGCACGAACACCACGAGCGCTGGGACGGTACGGGATATCCTCAGGGGCTCAAAGGTGACGGCA
TACACATTGCGGGACGCATCACCTGCCTGGCCGACATCTTTGACGCGCTGTCCAGCAAACGTGTATACAAGGAAGCATGG
CCGCAGGAAAAAGTGCTTGATTACATACAGGCCGAAAAAGGGCGGATATTCGACCCTGCGCTGGTGGATGCGCTGTTTGC
CAATATGGAAGAAATAGACCGCATACGCGATAGATATCAGGACGCACACTAG

Upstream 100 bases:

>100_bases
TGCAGTACAGACATAACCCGTGCGGACCACCGGAACAGATGCGCAGCGGCAAAGCATGATGCCATACATTCCGGTACCGG
CCGGCTACAAAGGAGTTCCC

Downstream 100 bases:

>100_bases
GAGGGTACCCCATGAGCGACCGGACTCCACGACATTTTCAAAGAATGCGGCAGCAGTATGCAGACGTCATGGACGCCCTG
CAGCAGCTGGGAACAGCAAC

Product: metal dependent phosphohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 523; Mature: 522

Protein sequence:

>523_residues
MSPAHIATSADDELIFAEEEPVQESAAADAHWTLLIVDDEEDVHTTTRLVLEDFTFDGIPLRCISAYTGAQAMEILRTEK
DIAVVLLDVVMESNHAGLHVARAIREELDNRLVRIILRTGQPGQAPERKVIISYDINDYKHKAELTSQRLFTTVYTALRS
YRDLRVIEQNRQGLRHIIDASADLFRIRSIRQLAQGVLTQLSSLYGLFSGSVYVQTSGFTATSENHESLQFIAATGKYDA
LQTDEGCPQLSSDVRAAVQQAVEEKRSIFNGRDYVGYFPARNGREHLIYLEGLSGVTPPDENLLQVFTNNVAVAFDNVYL
NKEIINTQKEVILRLGDVVESRSKETAHHVRRVAEFTRLLARAAGLGEETAELYLHASPMHDVGKIGIPDAILLKPGRLT
DEEREVMKTHTTIGYHILNTSERPIMQAAAIIAHEHHERWDGTGYPQGLKGDGIHIAGRITCLADIFDALSSKRVYKEAW
PQEKVLDYIQAEKGRIFDPALVDALFANMEEIDRIRDRYQDAH

Sequences:

>Translated_523_residues
MSPAHIATSADDELIFAEEEPVQESAAADAHWTLLIVDDEEDVHTTTRLVLEDFTFDGIPLRCISAYTGAQAMEILRTEK
DIAVVLLDVVMESNHAGLHVARAIREELDNRLVRIILRTGQPGQAPERKVIISYDINDYKHKAELTSQRLFTTVYTALRS
YRDLRVIEQNRQGLRHIIDASADLFRIRSIRQLAQGVLTQLSSLYGLFSGSVYVQTSGFTATSENHESLQFIAATGKYDA
LQTDEGCPQLSSDVRAAVQQAVEEKRSIFNGRDYVGYFPARNGREHLIYLEGLSGVTPPDENLLQVFTNNVAVAFDNVYL
NKEIINTQKEVILRLGDVVESRSKETAHHVRRVAEFTRLLARAAGLGEETAELYLHASPMHDVGKIGIPDAILLKPGRLT
DEEREVMKTHTTIGYHILNTSERPIMQAAAIIAHEHHERWDGTGYPQGLKGDGIHIAGRITCLADIFDALSSKRVYKEAW
PQEKVLDYIQAEKGRIFDPALVDALFANMEEIDRIRDRYQDAH
>Mature_522_residues
SPAHIATSADDELIFAEEEPVQESAAADAHWTLLIVDDEEDVHTTTRLVLEDFTFDGIPLRCISAYTGAQAMEILRTEKD
IAVVLLDVVMESNHAGLHVARAIREELDNRLVRIILRTGQPGQAPERKVIISYDINDYKHKAELTSQRLFTTVYTALRSY
RDLRVIEQNRQGLRHIIDASADLFRIRSIRQLAQGVLTQLSSLYGLFSGSVYVQTSGFTATSENHESLQFIAATGKYDAL
QTDEGCPQLSSDVRAAVQQAVEEKRSIFNGRDYVGYFPARNGREHLIYLEGLSGVTPPDENLLQVFTNNVAVAFDNVYLN
KEIINTQKEVILRLGDVVESRSKETAHHVRRVAEFTRLLARAAGLGEETAELYLHASPMHDVGKIGIPDAILLKPGRLTD
EEREVMKTHTTIGYHILNTSERPIMQAAAIIAHEHHERWDGTGYPQGLKGDGIHIAGRITCLADIFDALSSKRVYKEAWP
QEKVLDYIQAEKGRIFDPALVDALFANMEEIDRIRDRYQDAH

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG3437

COG function: function code KT; Response regulator containing a CheY-like receiver domain and an HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 58723; Mature: 58592

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPAHIATSADDELIFAEEEPVQESAAADAHWTLLIVDDEEDVHTTTRLVLEDFTFDGIP
CCCCCCCCCCCCCEEEECCCCHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCC
LRCISAYTGAQAMEILRTEKDIAVVLLDVVMESNHAGLHVARAIREELDNRLVRIILRTG
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
QPGQAPERKVIISYDINDYKHKAELTSQRLFTTVYTALRSYRDLRVIEQNRQGLRHIIDA
CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SADLFRIRSIRQLAQGVLTQLSSLYGLFSGSVYVQTSGFTATSENHESLQFIAATGKYDA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEECCCCCCCEEEEEECCCCCC
LQTDEGCPQLSSDVRAAVQQAVEEKRSIFNGRDYVGYFPARNGREHLIYLEGLSGVTPPD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEEECCCCCCCCC
ENLLQVFTNNVAVAFDNVYLNKEIINTQKEVILRLGDVVESRSKETAHHVRRVAEFTRLL
HHHHHHHHCCEEEEEECEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARAAGLGEETAELYLHASPMHDVGKIGIPDAILLKPGRLTDEEREVMKTHTTIGYHILNT
HHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHEEEEECC
SERPIMQAAAIIAHEHHERWDGTGYPQGLKGDGIHIAGRITCLADIFDALSSKRVYKEAW
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCHHHHHHC
PQEKVLDYIQAEKGRIFDPALVDALFANMEEIDRIRDRYQDAH
CHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SPAHIATSADDELIFAEEEPVQESAAADAHWTLLIVDDEEDVHTTTRLVLEDFTFDGIP
CCCCCCCCCCCCEEEECCCCHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCC
LRCISAYTGAQAMEILRTEKDIAVVLLDVVMESNHAGLHVARAIREELDNRLVRIILRTG
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
QPGQAPERKVIISYDINDYKHKAELTSQRLFTTVYTALRSYRDLRVIEQNRQGLRHIIDA
CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SADLFRIRSIRQLAQGVLTQLSSLYGLFSGSVYVQTSGFTATSENHESLQFIAATGKYDA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEECCCCCCCEEEEEECCCCCC
LQTDEGCPQLSSDVRAAVQQAVEEKRSIFNGRDYVGYFPARNGREHLIYLEGLSGVTPPD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEEECCCCCCCCC
ENLLQVFTNNVAVAFDNVYLNKEIINTQKEVILRLGDVVESRSKETAHHVRRVAEFTRLL
HHHHHHHHCCEEEEEECEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARAAGLGEETAELYLHASPMHDVGKIGIPDAILLKPGRLTDEEREVMKTHTTIGYHILNT
HHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHEEEEECC
SERPIMQAAAIIAHEHHERWDGTGYPQGLKGDGIHIAGRITCLADIFDALSSKRVYKEAW
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCHHHHHHC
PQEKVLDYIQAEKGRIFDPALVDALFANMEEIDRIRDRYQDAH
CHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]