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The map label for this gene is rrf2 [H]

Identifier: 78358152

GI number: 78358152

Start: 3101841

End: 3102281

Strand: Direct

Name: rrf2 [H]

Synonym: Dde_3112

Alternate gene names: 78358152

Gene position: 3101841-3102281 (Clockwise)

Preceding gene: 78358151

Following gene: 78358153

Centisome position: 83.15

GC content: 59.86

Gene sequence:

>441_bases
ATGAAGCTTTCTGCCCGCACCAGATACGCCACACGCCTGCTGCTTGACCTTGCCCTGCACGACGACAATACCCCCCGCAG
GGCGTCCATGCTTTCGCAAAGCACCGGTGTGACCGTCCAGTTTATCGAGCAGATACTGAAACCCCTGAAAAAAGAAGGGC
TGGTAACCAGCGTGCGGGGTGCCGCCGGCGGACACCTGCTGGCCGCAGACCCTCAGGAACTGACACTGGGGCACATTGTG
CGCGTGATGGAAGGGGGTATCCACATGACCGAGTGCAGCCGGGACGAAACAGCCTGTGAACGCGCGCACCAGTGCAGAAC
ACGGCAGGTGTGGATCAGGATATCCAGAGCCATGGAACAGGAACTGGAAGCAATCACACTTTCGGACCTCATGCAGGATG
CTTCCATCATCGCATCATCACCGGCCGACCGCCGCGGCTGA

Upstream 100 bases:

>100_bases
AAAAATAACGATTTCTTGACGTTGCAAAAGCTGCGTACTAAAGAAAAACAGACACCCCGCCAGCACTGCCGCCTGAACAT
TATACAGGATTGCAAGCATA

Downstream 100 bases:

>100_bases
CATCACCGTTTCTATAATATCCTTGTAAGCATATTCCGTTATGCTACCATAGGCCCTGCCGTTCACTTCAAATCAACAGG
TCAGGACATATGGTCATGCC

Product: BadM/Rrf2 family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MKLSARTRYATRLLLDLALHDDNTPRRASMLSQSTGVTVQFIEQILKPLKKEGLVTSVRGAAGGHLLAADPQELTLGHIV
RVMEGGIHMTECSRDETACERAHQCRTRQVWIRISRAMEQELEAITLSDLMQDASIIASSPADRRG

Sequences:

>Translated_146_residues
MKLSARTRYATRLLLDLALHDDNTPRRASMLSQSTGVTVQFIEQILKPLKKEGLVTSVRGAAGGHLLAADPQELTLGHIV
RVMEGGIHMTECSRDETACERAHQCRTRQVWIRISRAMEQELEAITLSDLMQDASIIASSPADRRG
>Mature_146_residues
MKLSARTRYATRLLLDLALHDDNTPRRASMLSQSTGVTVQFIEQILKPLKKEGLVTSVRGAAGGHLLAADPQELTLGHIV
RVMEGGIHMTECSRDETACERAHQCRTRQVWIRISRAMEQELEAITLSDLMQDASIIASSPADRRG

Specific function: Unknown

COG id: COG1959

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH rrf2-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788880, Length=137, Percent_Identity=29.9270072992701, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000944
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02082 Rrf2 [H]

EC number: NA

Molecular weight: Translated: 16178; Mature: 16178

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSARTRYATRLLLDLALHDDNTPRRASMLSQSTGVTVQFIEQILKPLKKEGLVTSVRG
CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEECCC
AAGGHLLAADPQELTLGHIVRVMEGGIHMTECSRDETACERAHQCRTRQVWIRISRAMEQ
CCCCCEEECCCHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ELEAITLSDLMQDASIIASSPADRRG
HHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKLSARTRYATRLLLDLALHDDNTPRRASMLSQSTGVTVQFIEQILKPLKKEGLVTSVRG
CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEECCC
AAGGHLLAADPQELTLGHIVRVMEGGIHMTECSRDETACERAHQCRTRQVWIRISRAMEQ
CCCCCEEECCCHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ELEAITLSDLMQDASIIASSPADRRG
HHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8335628 [H]