| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is yegQ [C]
Identifier: 78358135
GI number: 78358135
Start: 3083368
End: 3084717
Strand: Direct
Name: yegQ [C]
Synonym: Dde_3095
Alternate gene names: 78358135
Gene position: 3083368-3084717 (Clockwise)
Preceding gene: 78358134
Following gene: 78358136
Centisome position: 82.66
GC content: 64.44
Gene sequence:
>1350_bases ATGCCCCTGACAACATTTTCTCCGGAACTGCTGGCCCCTGCCGGTGACATGTCCAGACTGGACGCCGTACTGCGCTACGG TGCCGACGCCGTCTATCTGGGCGGCACGGAAATGAATCTGCGCGCCGGTGCCGCGGGGTTCACCCCCGAAGCTCTGGGCA CTGCACTGGCCAAAGCCCGCCGCTGCGGCGCCAGAGTATACTGCTGTGTCAACGCCCTGCCCTACGAGCATCAGCTGGAA ACGGTGCGCGCCACACTGGAAAGACTGGCGCAGCCTTTCAGCTGCAACCAGCAGACTCTGGAACCGCACTGGCGCGACGA CACGCTGCCCGACACCACGGAAAACAGCATTGACGGGCTGATCATAGCCGACCCCGGCGTGCTGCGCATGGCGCGCCGCA TAGCGCCGCACATCCCCGTGCACATGAGCACACAGGCCAATACGGCCAACAGCGAATCCGCAGCATTCTGGCGCGATATG GGGGCAAGCAGGCTAAATCTGGCACGCGAGCTGGGCGCGGCGGACATACGTGCCATCATGCGGGCCGTACCCGACGTGGA ATATGAAACATTTGTCCACGGGGCCATGTGTCTTGCCGTTTCCGGCCGCTGCCTGCTGAGCGCATGGATGAACGACCGCC CCGCCAATCTGGGGCAGTGCACCCACCCGTGCCGGTTCGACTACCGCACGGCGGGGCTTGCCGCCAGTGATGCGGAACCG GACCATGCAGGCATCGAACTGGACGTCGAAGAACGCACCCGCGCCGGCGCACCGGCATGGACGGTGACGCAGGACAGTGG CTGGTCACACATCTGGAGTCCGCATGACCTGTGTCTGGTGCGGTATCTGCGCTGGTTTGCCGTGCAGGGCGTGGCTGCAC TGAAAATTGAAGGCCGCATGAAAACCGCAGGCTATGCCGCGCAGGTTGTTGATGTTTACCGTACTGCCGTAGATGACCTC GCCGCCGGGCGTTTTCGCCCTGCGCTGTACATGCGTGAGCTGTGCAACACGGCCACCCGTCCGCTTTCGTCAGGTTTTTT CCTGCCCCGCGGACGCAGGCGCACCTGGCAGGCGGCCTCTTCCGGCCATCGTCTGCCGCTGGTGGCCAGAACAGGCCGCC GTCTTTCCGCAGGCAGCTGGGAAATGGCTGTACTGGCACCGTGGCAGTGCGACAGACCGGTCGAGATTCTCGTTCCGGGA CTGAAAAGGCCCCTGCTGCAACCGCAGCACTGCCGCGTGGAAAACCACAGAGGCGAAACCGCGCGGCAGGTGCACCCCGG CACTTCCGCGATACTGCACTGCGACCACCCCGACCTTGCTCCGGGGCTGTTTCTGCGGGCCTGCACATAG
Upstream 100 bases:
>100_bases CGCTGGGCACGGGCAAGGGTGGCTTGCGCGTGCCGTATCTTATACTCGAAAAACTGAAGGCGGCCCGCACAGCAAACGGA CTGCCTGTCTGACGGATACC
Downstream 100 bases:
>100_bases CACGCAGCACCGCCTGCGCGCGGACAAGCACACAGGGTTCATAACGGCATGAATACACAGCAGCGCCGCCTGAAACGCGG CACATTCCGCGAACAGCCGC
Product: U32 family peptidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 449; Mature: 448
Protein sequence:
>449_residues MPLTTFSPELLAPAGDMSRLDAVLRYGADAVYLGGTEMNLRAGAAGFTPEALGTALAKARRCGARVYCCVNALPYEHQLE TVRATLERLAQPFSCNQQTLEPHWRDDTLPDTTENSIDGLIIADPGVLRMARRIAPHIPVHMSTQANTANSESAAFWRDM GASRLNLARELGAADIRAIMRAVPDVEYETFVHGAMCLAVSGRCLLSAWMNDRPANLGQCTHPCRFDYRTAGLAASDAEP DHAGIELDVEERTRAGAPAWTVTQDSGWSHIWSPHDLCLVRYLRWFAVQGVAALKIEGRMKTAGYAAQVVDVYRTAVDDL AAGRFRPALYMRELCNTATRPLSSGFFLPRGRRRTWQAASSGHRLPLVARTGRRLSAGSWEMAVLAPWQCDRPVEILVPG LKRPLLQPQHCRVENHRGETARQVHPGTSAILHCDHPDLAPGLFLRACT
Sequences:
>Translated_449_residues MPLTTFSPELLAPAGDMSRLDAVLRYGADAVYLGGTEMNLRAGAAGFTPEALGTALAKARRCGARVYCCVNALPYEHQLE TVRATLERLAQPFSCNQQTLEPHWRDDTLPDTTENSIDGLIIADPGVLRMARRIAPHIPVHMSTQANTANSESAAFWRDM GASRLNLARELGAADIRAIMRAVPDVEYETFVHGAMCLAVSGRCLLSAWMNDRPANLGQCTHPCRFDYRTAGLAASDAEP DHAGIELDVEERTRAGAPAWTVTQDSGWSHIWSPHDLCLVRYLRWFAVQGVAALKIEGRMKTAGYAAQVVDVYRTAVDDL AAGRFRPALYMRELCNTATRPLSSGFFLPRGRRRTWQAASSGHRLPLVARTGRRLSAGSWEMAVLAPWQCDRPVEILVPG LKRPLLQPQHCRVENHRGETARQVHPGTSAILHCDHPDLAPGLFLRACT >Mature_448_residues PLTTFSPELLAPAGDMSRLDAVLRYGADAVYLGGTEMNLRAGAAGFTPEALGTALAKARRCGARVYCCVNALPYEHQLET VRATLERLAQPFSCNQQTLEPHWRDDTLPDTTENSIDGLIIADPGVLRMARRIAPHIPVHMSTQANTANSESAAFWRDMG ASRLNLARELGAADIRAIMRAVPDVEYETFVHGAMCLAVSGRCLLSAWMNDRPANLGQCTHPCRFDYRTAGLAASDAEPD HAGIELDVEERTRAGAPAWTVTQDSGWSHIWSPHDLCLVRYLRWFAVQGVAALKIEGRMKTAGYAAQVVDVYRTAVDDLA AGRFRPALYMRELCNTATRPLSSGFFLPRGRRRTWQAASSGHRLPLVARTGRRLSAGSWEMAVLAPWQCDRPVEILVPGL KRPLLQPQHCRVENHRGETARQVHPGTSAILHCDHPDLAPGLFLRACT
Specific function: Unknown
COG id: COG0826
COG function: function code O; Collagenase and related proteases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase U32 family [H]
Homologues:
Organism=Escherichia coli, GI1788397, Length=380, Percent_Identity=33.9473684210526, Blast_Score=193, Evalue=2e-50, Organism=Escherichia coli, GI87081910, Length=324, Percent_Identity=29.0123456790123, Blast_Score=124, Evalue=1e-29, Organism=Escherichia coli, GI1789548, Length=318, Percent_Identity=26.7295597484277, Blast_Score=103, Evalue=3e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001539 [H]
Pfam domain/function: PF01136 Peptidase_U32 [H]
EC number: 3.4.-.- [C]
Molecular weight: Translated: 49362; Mature: 49231
Theoretical pI: Translated: 7.97; Mature: 7.97
Prosite motif: PS01276 PEPTIDASE_U32
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLTTFSPELLAPAGDMSRLDAVLRYGADAVYLGGTEMNLRAGAAGFTPEALGTALAKAR CCCCCCCHHHHCCCCCHHHHHHHHHCCCCEEEECCCEEEEECCCCCCCHHHHHHHHHHHH RCGARVYCCVNALPYEHQLETVRATLERLAQPFSCNQQTLEPHWRDDTLPDTTENSIDGL HCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEE IIADPGVLRMARRIAPHIPVHMSTQANTANSESAAFWRDMGASRLNLARELGAADIRAIM EEECCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHCCHHHHHHHHHHCHHHHHHHH RAVPDVEYETFVHGAMCLAVSGRCLLSAWMNDRPANLGQCTHPCRFDYRTAGLAASDAEP HHCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCC DHAGIELDVEERTRAGAPAWTVTQDSGWSHIWSPHDLCLVRYLRWFAVQGVAALKIEGRM CCCCEEEEHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCC KTAGYAAQVVDVYRTAVDDLAAGRFRPALYMRELCNTATRPLSSGFFLPRGRRRTWQAAS CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHC SGHRLPLVARTGRRLSAGSWEMAVLAPWQCDRPVEILVPGLKRPLLQPQHCRVENHRGET CCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCHHHHCCCHHCCCCCCCCCCCCCCCCCC ARQVHPGTSAILHCDHPDLAPGLFLRACT HHHCCCCCCEEEECCCCCCCCCCEEEECC >Mature Secondary Structure PLTTFSPELLAPAGDMSRLDAVLRYGADAVYLGGTEMNLRAGAAGFTPEALGTALAKAR CCCCCCHHHHCCCCCHHHHHHHHHCCCCEEEECCCEEEEECCCCCCCHHHHHHHHHHHH RCGARVYCCVNALPYEHQLETVRATLERLAQPFSCNQQTLEPHWRDDTLPDTTENSIDGL HCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEE IIADPGVLRMARRIAPHIPVHMSTQANTANSESAAFWRDMGASRLNLARELGAADIRAIM EEECCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHCCHHHHHHHHHHCHHHHHHHH RAVPDVEYETFVHGAMCLAVSGRCLLSAWMNDRPANLGQCTHPCRFDYRTAGLAASDAEP HHCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCC DHAGIELDVEERTRAGAPAWTVTQDSGWSHIWSPHDLCLVRYLRWFAVQGVAALKIEGRM CCCCEEEEHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCC KTAGYAAQVVDVYRTAVDDLAAGRFRPALYMRELCNTATRPLSSGFFLPRGRRRTWQAAS CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHC SGHRLPLVARTGRRLSAGSWEMAVLAPWQCDRPVEILVPGLKRPLLQPQHCRVENHRGET CCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCHHHHCCCHHCCCCCCCCCCCCCCCCCC ARQVHPGTSAILHCDHPDLAPGLFLRACT HHHCCCCCCEEEECCCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9923682 [H]