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The map label for this gene is ydaM [H]

Identifier: 78358127

GI number: 78358127

Start: 3075451

End: 3076536

Strand: Direct

Name: ydaM [H]

Synonym: Dde_3087

Alternate gene names: 78358127

Gene position: 3075451-3076536 (Clockwise)

Preceding gene: 78358126

Following gene: 78358134

Centisome position: 82.45

GC content: 54.33

Gene sequence:

>1086_bases
ATGAAGCAGCATTCAGAAACCAATACGGTACGCTTCACCTGCGACCGCAACGGCGTTATCAGGCACGTTGTCTCGGACAA
TGCAGGCCTGTTTGCCGGCATAGACCTGCCATTGCATATCAACGACCTGACCACAGCATCAGCACAAAAACGCTACCACG
CCTTTCTGGACACGCTGACCGCAGATGGATTCGGCCTGTGCGATTCTCTTGTTCTGCGCGGCAGAACAGGTGTTCGGCAG
TTTGCCGTCTTTGGTGTCTGCAAAGGCGACTGTTTTCATATGATCGCGCTGCAATCGTCCCCGCATATTACAAACATTTT
CAGCGAGTTAATACATATGCTGAATGAACAGGGGGTGCTGCTGCGGGCAACGCAAAAAAAGGCTGCGGAAGCCCGCAGTA
CGGGCAGCGACAACGTGCAGCTGCTTGAAGACTACATGATAATAAACAACGAGCTTTCGCGGAACAAACGCGAGCTGGCA
ATCAGACACGAACAGCTGAAAAAAGCCTTCAGCGACATTGAGGAACTAAGCCGCACCGACCCGCTGACCGGAGCCTGCAA
CCGCCGCAAGGTCATTGAATTTCTGTCAGCGGAAATCGACCGCAGCAAACGTTACGGCACACCGCTGTCCATACTGAGCC
TTGATATAGACCGATTCAAGGCCATCAATGACACTTACGGGCACGCTGCCGGAGACGACGCGCTTATTGCATTCTGCAGA
GTATGCAGGCAGCAGCTCAGAAAAACAGACCTTTTCGGCAGAACAGGCGGCGAAGAGTTTGTCGCCGTTCTTCCCCATGC
CGCCTGTCGCGACGCACAAATCTCGGCAGAGCGTATCCGCCGCCATGTTGAACAGATACACATTACGTATAACAACGCAT
GCGTGCGTTTTACAGTCAGCATCGGCATAGCCGTTCACGAGGCAGGGGAAAATACCGATACGCTGCTGCGCAGGGCCGAT
GCCGCGCTTTACAGGGCTAAAACAGCAGGCCGCAACACAGTCAGCGTGGCAGAAAAATCTCCGGTAATGCCCGCAGAAAC
TCCGCACGGGCACAGCCCGGAACAGCCCGCTGCCGGACATAAATAA

Upstream 100 bases:

>100_bases
ATACTCAGTCCGGGACTTGCCGCAGCAGTAGGGGCCGACGGCACGGGAACCGACGGCGCGCAGGCTGTCGCACTGGCAAC
GCAACTGACATCATAACCAT

Downstream 100 bases:

>100_bases
ATCATTCCCGGCCCTGCAGGACGCTCTTTCCTTAACCGCACGCCGTGCGCAGGGACCGTTTCCGCCGCAGCACGCCTGAA
AAAACATGAACTGCTGCCGC

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MKQHSETNTVRFTCDRNGVIRHVVSDNAGLFAGIDLPLHINDLTTASAQKRYHAFLDTLTADGFGLCDSLVLRGRTGVRQ
FAVFGVCKGDCFHMIALQSSPHITNIFSELIHMLNEQGVLLRATQKKAAEARSTGSDNVQLLEDYMIINNELSRNKRELA
IRHEQLKKAFSDIEELSRTDPLTGACNRRKVIEFLSAEIDRSKRYGTPLSILSLDIDRFKAINDTYGHAAGDDALIAFCR
VCRQQLRKTDLFGRTGGEEFVAVLPHAACRDAQISAERIRRHVEQIHITYNNACVRFTVSIGIAVHEAGENTDTLLRRAD
AALYRAKTAGRNTVSVAEKSPVMPAETPHGHSPEQPAAGHK

Sequences:

>Translated_361_residues
MKQHSETNTVRFTCDRNGVIRHVVSDNAGLFAGIDLPLHINDLTTASAQKRYHAFLDTLTADGFGLCDSLVLRGRTGVRQ
FAVFGVCKGDCFHMIALQSSPHITNIFSELIHMLNEQGVLLRATQKKAAEARSTGSDNVQLLEDYMIINNELSRNKRELA
IRHEQLKKAFSDIEELSRTDPLTGACNRRKVIEFLSAEIDRSKRYGTPLSILSLDIDRFKAINDTYGHAAGDDALIAFCR
VCRQQLRKTDLFGRTGGEEFVAVLPHAACRDAQISAERIRRHVEQIHITYNNACVRFTVSIGIAVHEAGENTDTLLRRAD
AALYRAKTAGRNTVSVAEKSPVMPAETPHGHSPEQPAAGHK
>Mature_361_residues
MKQHSETNTVRFTCDRNGVIRHVVSDNAGLFAGIDLPLHINDLTTASAQKRYHAFLDTLTADGFGLCDSLVLRGRTGVRQ
FAVFGVCKGDCFHMIALQSSPHITNIFSELIHMLNEQGVLLRATQKKAAEARSTGSDNVQLLEDYMIINNELSRNKRELA
IRHEQLKKAFSDIEELSRTDPLTGACNRRKVIEFLSAEIDRSKRYGTPLSILSLDIDRFKAINDTYGHAAGDDALIAFCR
VCRQQLRKTDLFGRTGGEEFVAVLPHAACRDAQISAERIRRHVEQIHITYNNACVRFTVSIGIAVHEAGENTDTLLRRAD
AALYRAKTAGRNTVSVAEKSPVMPAETPHGHSPEQPAAGHK

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=189, Percent_Identity=40.7407407407407, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI145693134, Length=220, Percent_Identity=35.9090909090909, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1786584, Length=166, Percent_Identity=34.9397590361446, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1787262, Length=162, Percent_Identity=37.037037037037, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1787802, Length=132, Percent_Identity=40.1515151515151, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87082007, Length=173, Percent_Identity=34.6820809248555, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787816, Length=169, Percent_Identity=33.7278106508876, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1788381, Length=134, Percent_Identity=35.8208955223881, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1788085, Length=167, Percent_Identity=32.9341317365269, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081977, Length=181, Percent_Identity=31.4917127071823, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI87081974, Length=119, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787541, Length=164, Percent_Identity=28.0487804878049, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 40028; Mature: 40028

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQHSETNTVRFTCDRNGVIRHVVSDNAGLFAGIDLPLHINDLTTASAQKRYHAFLDTLT
CCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCEEECCCCHHHHHHHHHHHHHHHC
ADGFGLCDSLVLRGRTGVRQFAVFGVCKGDCFHMIALQSSPHITNIFSELIHMLNEQGVL
CCCHHHHHHHHHCCCCCHHHHHHEEEECCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEE
LRATQKKAAEARSTGSDNVQLLEDYMIINNELSRNKRELAIRHEQLKKAFSDIEELSRTD
EEEHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
PLTGACNRRKVIEFLSAEIDRSKRYGTPLSILSLDIDRFKAINDTYGHAAGDDALIAFCR
CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHEEECHHHHHHHCCCCCCCCCHHHHHHHHH
VCRQQLRKTDLFGRTGGEEFVAVLPHAACRDAQISAERIRRHVEQIHITYNNACVRFTVS
HHHHHHHHHHCCCCCCCHHHHHHCCCHHCCCCCCCHHHHHHHHHHEEEEECCEEEEEEEE
IGIAVHEAGENTDTLLRRADAALYRAKTAGRNTVSVAEKSPVMPAETPHGHSPEQPAAGH
EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCCCCCCCCCCCCCCCCCCCC
K
C
>Mature Secondary Structure
MKQHSETNTVRFTCDRNGVIRHVVSDNAGLFAGIDLPLHINDLTTASAQKRYHAFLDTLT
CCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCEEECCCCHHHHHHHHHHHHHHHC
ADGFGLCDSLVLRGRTGVRQFAVFGVCKGDCFHMIALQSSPHITNIFSELIHMLNEQGVL
CCCHHHHHHHHHCCCCCHHHHHHEEEECCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEE
LRATQKKAAEARSTGSDNVQLLEDYMIINNELSRNKRELAIRHEQLKKAFSDIEELSRTD
EEEHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
PLTGACNRRKVIEFLSAEIDRSKRYGTPLSILSLDIDRFKAINDTYGHAAGDDALIAFCR
CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHEEECHHHHHHHCCCCCCCCCHHHHHHHHH
VCRQQLRKTDLFGRTGGEEFVAVLPHAACRDAQISAERIRRHVEQIHITYNNACVRFTVS
HHHHHHHHHHCCCCCCCHHHHHHCCCHHCCCCCCCHHHHHHHHHHEEEEECCEEEEEEEE
IGIAVHEAGENTDTLLRRADAALYRAKTAGRNTVSVAEKSPVMPAETPHGHSPEQPAAGH
EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCCCCCCCCCCCCCCCCCCCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]