| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is hsdM [C]
Identifier: 78357909
GI number: 78357909
Start: 2854571
End: 2856598
Strand: Direct
Name: hsdM [C]
Synonym: Dde_2868
Alternate gene names: 78357909
Gene position: 2854571-2856598 (Clockwise)
Preceding gene: 78357908
Following gene: 78357910
Centisome position: 76.53
GC content: 57.15
Gene sequence:
>2028_bases ATGAACGAATTTACGGGATCGGCAGCTTCACAGGCTGACTTTATTTGGAAGAACGCGGAAGACCTGTGGGGGGACTTCAA ACATACGGACTTTGGCAAGATCATCTTGCCGTTTACCTTGCTGCGCCGCCTGGAGTGTGCGTTGGAGCCAACCCGCGAAG CGGTGAGAGAGGCATACGCCACTTTCAAGGATGCCGATGTTGAGCTGGACACCATTCTGCGCTCTACCGCTGAATACCCC TTCTTCAACACCTCAGAATACTCCCTTGGCACCCTGGGTAGCACCAAGACGCGCCGCAACCTAGAAGACTACATCGCCCT GTTTTCAGATAACGCCCGCGCTATCTTCGAGGAGTTCGATTTCGGCAATACCGTGATCCGGCTGGAGAAGGCTGGCTTGC TGTACAAGATTTGCCAGAACTTTGCCAAGATCGACCTGCACCCTGAGGTGGTGCCGGATCGGGTGATGAGCAACATCTAC GAACACCTGATTCGCCGCTTTGGTGCCGAGGTCAATGAAGGGGCCGAGGACTTCATGACGCCGCGTGACATCGTTCACCT GGCGACCGCGCTTTTGCTTGACCCGGATGACGCCCTGTTTGAGGCCAGCCCCGGTTTGATTCGTACCCTGTATGACCCGA CCTGCGGCACGGGTGGGTTCCTCACTGATGCCATGAACCATGTGGGTGATTACGGTGGCCGCGACAAGGTACCGCCGGTT CTGGTGCCGCACGGGCAGGAGCTGGAACCGGAAACCCATGCGGTTTGTGTGGCCGGTATGCTGATCCGCCGTCTGGAATC CGACCCTGGCCGCGATCTGTCGAAGAACATTCGTCAGGGCAGTACGCTGTCCAACGACCAGTTTGCCGGTGAGCGTTTCC ACTACTGCCTGTCCAATCCGCCTTTTGGCAAGAAATGGGAGAAGGACAAAAACGCCGTCGAAGCGGAACACAAAAAAGGC GAATTGGGCCGCTTTGGGCCGGGCCTGCCGAAAATCAGCGATGGCTCCATGCTGTTTTTGATGCATCTTGCCAGCAAGCT GGAACTGCCGATCAACGGCGGTGGCCGCGCCGCTATCGTGCTGTCCGGTTCGCCACTATTCAACGGTGGTGCCGCGTCTG GCGAATCGGAAATCCGCCGCTGGTTGCTGGAAAACGACCTGATTGAAGCCATTGTGGCCCTGCCAACGGATCTGTTCTTC CGCACCAATATCGCCACCTACCTGTGGATTCTATCGAACAAGAAGCCGCAGGAGCGCAAAGGCAAGGTGCAGTTGATCAA CGCCACCGACCTGTGGACTTCAATTCGCAACGAGGGCAACAAGCGCCGTATTGTCAGCGATGATCAGCGCCGCCAGATTT TGGACATCTACGCCGCTGGGGAAACCGATGCGCTTTCCCGGATGCTCGACTACCGCACCTTTGGCTACCGCCGTATCAAG GTACTGCGCCCGCTGCGCATGATCCTAGAATTGGATAAGGCGGGCATGGAGCGGCTGGAAGCCGACCCCGCTTGGGAAAA GCTCCCTGACGCGCATCAGGCATTCTGGCGCAACGCTCTCAAGCCGCTGATCGGGCAAACGCAGACCTATGGTTGGGCAG AAACCTTTGCCAAGGACACAATCAAGTCCGACGAAGCCAAGCAGCTCAAGGTCAAGGCCAACAAGACGTTTATCGCCGCG CTGATCAACGCCTTTGGTCACAAAGACCCGGAAGCCGAGCCCGTCACAGATGCCAACGGCAACCTGGTGCCGGATACTGA CCTGACCGATTACGAAAATGTTCCCTACATGGAAGACATTGACGACTACTTCGCCCGTGAAGTGCTGCCCCATGTCCCGG ATGCCTATCTGGACGAGAGCTTTACCGATGCGAAGGATGGCAAGCTGGGCCGCGTCGGCTATGAGATCAACTTCAACCGC TTCTTCTATCAGTACCAGCCGCCGCGCAAGCTGCATGATATTGATGAAGACCTGAAGCAGGTGGAAGCCGAGATTGCCGC GCTACTGGCAGAGGTGGCCAGCAAATGA
Upstream 100 bases:
>100_bases TAGCCCGGAAATGGAATCCAGTCCCTTTTGTGCAAAATATGGTTGATAATCACCAGCTGATCATGATAGCGTTTCGTGCA AAAGGTGGTTGGAGGCCAGG
Downstream 100 bases:
>100_bases GCCAGTACAAAGCGTATCCCGCGTACAAGGATTCCGGCGTTGAGTGGATTGGGCAGGTGCCGGAGCATTGGAAGATTGCG CCAGTAAAGTATCACTACGA
Product: type I restriction-modification system DNA methylase
Products: NA
Alternate protein names: M.MjaXP [H]
Number of amino acids: Translated: 675; Mature: 675
Protein sequence:
>675_residues MNEFTGSAASQADFIWKNAEDLWGDFKHTDFGKIILPFTLLRRLECALEPTREAVREAYATFKDADVELDTILRSTAEYP FFNTSEYSLGTLGSTKTRRNLEDYIALFSDNARAIFEEFDFGNTVIRLEKAGLLYKICQNFAKIDLHPEVVPDRVMSNIY EHLIRRFGAEVNEGAEDFMTPRDIVHLATALLLDPDDALFEASPGLIRTLYDPTCGTGGFLTDAMNHVGDYGGRDKVPPV LVPHGQELEPETHAVCVAGMLIRRLESDPGRDLSKNIRQGSTLSNDQFAGERFHYCLSNPPFGKKWEKDKNAVEAEHKKG ELGRFGPGLPKISDGSMLFLMHLASKLELPINGGGRAAIVLSGSPLFNGGAASGESEIRRWLLENDLIEAIVALPTDLFF RTNIATYLWILSNKKPQERKGKVQLINATDLWTSIRNEGNKRRIVSDDQRRQILDIYAAGETDALSRMLDYRTFGYRRIK VLRPLRMILELDKAGMERLEADPAWEKLPDAHQAFWRNALKPLIGQTQTYGWAETFAKDTIKSDEAKQLKVKANKTFIAA LINAFGHKDPEAEPVTDANGNLVPDTDLTDYENVPYMEDIDDYFAREVLPHVPDAYLDESFTDAKDGKLGRVGYEINFNR FFYQYQPPRKLHDIDEDLKQVEAEIAALLAEVASK
Sequences:
>Translated_675_residues MNEFTGSAASQADFIWKNAEDLWGDFKHTDFGKIILPFTLLRRLECALEPTREAVREAYATFKDADVELDTILRSTAEYP FFNTSEYSLGTLGSTKTRRNLEDYIALFSDNARAIFEEFDFGNTVIRLEKAGLLYKICQNFAKIDLHPEVVPDRVMSNIY EHLIRRFGAEVNEGAEDFMTPRDIVHLATALLLDPDDALFEASPGLIRTLYDPTCGTGGFLTDAMNHVGDYGGRDKVPPV LVPHGQELEPETHAVCVAGMLIRRLESDPGRDLSKNIRQGSTLSNDQFAGERFHYCLSNPPFGKKWEKDKNAVEAEHKKG ELGRFGPGLPKISDGSMLFLMHLASKLELPINGGGRAAIVLSGSPLFNGGAASGESEIRRWLLENDLIEAIVALPTDLFF RTNIATYLWILSNKKPQERKGKVQLINATDLWTSIRNEGNKRRIVSDDQRRQILDIYAAGETDALSRMLDYRTFGYRRIK VLRPLRMILELDKAGMERLEADPAWEKLPDAHQAFWRNALKPLIGQTQTYGWAETFAKDTIKSDEAKQLKVKANKTFIAA LINAFGHKDPEAEPVTDANGNLVPDTDLTDYENVPYMEDIDDYFAREVLPHVPDAYLDESFTDAKDGKLGRVGYEINFNR FFYQYQPPRKLHDIDEDLKQVEAEIAALLAEVASK >Mature_675_residues MNEFTGSAASQADFIWKNAEDLWGDFKHTDFGKIILPFTLLRRLECALEPTREAVREAYATFKDADVELDTILRSTAEYP FFNTSEYSLGTLGSTKTRRNLEDYIALFSDNARAIFEEFDFGNTVIRLEKAGLLYKICQNFAKIDLHPEVVPDRVMSNIY EHLIRRFGAEVNEGAEDFMTPRDIVHLATALLLDPDDALFEASPGLIRTLYDPTCGTGGFLTDAMNHVGDYGGRDKVPPV LVPHGQELEPETHAVCVAGMLIRRLESDPGRDLSKNIRQGSTLSNDQFAGERFHYCLSNPPFGKKWEKDKNAVEAEHKKG ELGRFGPGLPKISDGSMLFLMHLASKLELPINGGGRAAIVLSGSPLFNGGAASGESEIRRWLLENDLIEAIVALPTDLFF RTNIATYLWILSNKKPQERKGKVQLINATDLWTSIRNEGNKRRIVSDDQRRQILDIYAAGETDALSRMLDYRTFGYRRIK VLRPLRMILELDKAGMERLEADPAWEKLPDAHQAFWRNALKPLIGQTQTYGWAETFAKDTIKSDEAKQLKVKANKTFIAA LINAFGHKDPEAEPVTDANGNLVPDTDLTDYENVPYMEDIDDYFAREVLPHVPDAYLDESFTDAKDGKLGRVGYEINFNR FFYQYQPPRKLHDIDEDLKQVEAEIAALLAEVASK
Specific function: Methylation of specific adenine residues; required for both restriction and modification activities [H]
COG id: COG0286
COG function: function code V; Type I restriction-modification system methyltransferase subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022749 - InterPro: IPR003356 - InterPro: IPR002052 - InterPro: IPR002296 [H]
Pfam domain/function: PF12161 HsdM_N; PF02384 N6_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 76131; Mature: 76131
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNEFTGSAASQADFIWKNAEDLWGDFKHTDFGKIILPFTLLRRLECALEPTREAVREAYA CCCCCCCCCCCHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH TFKDADVELDTILRSTAEYPFFNTSEYSLGTLGSTKTRRNLEDYIALFSDNARAIFEEFD HHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHC FGNTVIRLEKAGLLYKICQNFAKIDLHPEVVPDRVMSNIYEHLIRRFGAEVNEGAEDFMT CCCEEEEEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCC PRDIVHLATALLLDPDDALFEASPGLIRTLYDPTCGTGGFLTDAMNHVGDYGGRDKVPPV HHHHHHHHHHHHCCCCHHHHCCCCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCE LVPHGQELEPETHAVCVAGMLIRRLESDPGRDLSKNIRQGSTLSNDQFAGERFHYCLSNP ECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHCCCCC PFGKKWEKDKNAVEAEHKKGELGRFGPGLPKISDGSMLFLMHLASKLELPINGGGRAAIV CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEE LSGSPLFNGGAASGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNKKPQERK EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHEEEEECCCCCCCCC GKVQLINATDLWTSIRNEGNKRRIVSDDQRRQILDIYAAGETDALSRMLDYRTFGYRRIK CCEEEEEHHHHHHHHHCCCCCCCCCCCHHHHHEEHEEECCCHHHHHHHHHHHHHCHHHHH VLRPLRMILELDKAGMERLEADPAWEKLPDAHQAFWRNALKPLIGQTQTYGWAETFAKDT HHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH IKSDEAKQLKVKANKTFIAALINAFGHKDPEAEPVTDANGNLVPDTDLTDYENVPYMEDI HCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH DDYFAREVLPHVPDAYLDESFTDAKDGKLGRVGYEINFNRFFYQYQPPRKLHDIDEDLKQ HHHHHHHHHCCCCHHHHCCCCCCCCCCCEEEEEEEEEEEEEEEEECCCHHHHHHHHHHHH VEAEIAALLAEVASK HHHHHHHHHHHHHCC >Mature Secondary Structure MNEFTGSAASQADFIWKNAEDLWGDFKHTDFGKIILPFTLLRRLECALEPTREAVREAYA CCCCCCCCCCCHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH TFKDADVELDTILRSTAEYPFFNTSEYSLGTLGSTKTRRNLEDYIALFSDNARAIFEEFD HHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHC FGNTVIRLEKAGLLYKICQNFAKIDLHPEVVPDRVMSNIYEHLIRRFGAEVNEGAEDFMT CCCEEEEEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCC PRDIVHLATALLLDPDDALFEASPGLIRTLYDPTCGTGGFLTDAMNHVGDYGGRDKVPPV HHHHHHHHHHHHCCCCHHHHCCCCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCE LVPHGQELEPETHAVCVAGMLIRRLESDPGRDLSKNIRQGSTLSNDQFAGERFHYCLSNP ECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHCCCCC PFGKKWEKDKNAVEAEHKKGELGRFGPGLPKISDGSMLFLMHLASKLELPINGGGRAAIV CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEE LSGSPLFNGGAASGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNKKPQERK EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHEEEEECCCCCCCCC GKVQLINATDLWTSIRNEGNKRRIVSDDQRRQILDIYAAGETDALSRMLDYRTFGYRRIK CCEEEEEHHHHHHHHHCCCCCCCCCCCHHHHHEEHEEECCCHHHHHHHHHHHHHCHHHHH VLRPLRMILELDKAGMERLEADPAWEKLPDAHQAFWRNALKPLIGQTQTYGWAETFAKDT HHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH IKSDEAKQLKVKANKTFIAALINAFGHKDPEAEPVTDANGNLVPDTDLTDYENVPYMEDI HCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH DDYFAREVLPHVPDAYLDESFTDAKDGKLGRVGYEINFNRFFYQYQPPRKLHDIDEDLKQ HHHHHHHHHCCCCHHHHCCCCCCCCCCCEEEEEEEEEEEEEEEEECCCHHHHHHHHHHHH VEAEIAALLAEVASK HHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]