| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is yyaL [H]
Identifier: 78357889
GI number: 78357889
Start: 2834390
End: 2835535
Strand: Direct
Name: yyaL [H]
Synonym: Dde_2848
Alternate gene names: 78357889
Gene position: 2834390-2835535 (Clockwise)
Preceding gene: 78357887
Following gene: 78357891
Centisome position: 75.98
GC content: 60.12
Gene sequence:
>1146_bases ATGACAGCACAGCGCCCCAACCGGTTGATCAACGAGTCCAGCCCCTATCTGCTGCAACACGCCCGCAATCCCGTGGACTG GCATCCCTGGGGTGAAGAAGCTTTTGCGCTGGCCCGCAGCGAAGATAAACCCGTATTTCTTTCCATCGGCTATTCCACAT GCCACTGGTGTCATGTGATGGCGCACGAATCCTTTGAGGATGAAGCCGTAGCCGCTCTGCTTAACGAAGCTTTCATCAAC GTCAAGGTCGACCGCGAAGACCGTCCCGACATAGACAGCATATATATGGCAGCCTGTCAGATGCTTACCGGCTCCGGCGG ATGGCCCCTGACCATTGTCATGACGCCGGACGGCAGGCCGTTTTTTGCCGCCACCTACATTCCGCGCCTTTCCCGCGGCG GACGCACCGGCATGCTTGAGCTGGTGCCGCGCATCCGCGACATATGGCGCAAACAACGCGCCGATGTCACCGCATCGGCA GACTCTGTGGCGGAACACATGCGACGGCATGCAGAAGGACTGCTGCGCCCTTCCAGCGGCGGGGCGCCTGACGACACCAC CGTGCGGCAGGCAGTGGATACCCTGTGCCAGAGATATGACGCCCGCCACGGCGGGTTCGGATCCGCGCCCAAATTTCCTG CGCCGCATTCGCTGCTACTGCTGCTGCGCCACGCGCACCGCACACAGGATGCCGCCCGGCGCGCACAGCTGACCGGCATG GTTTCCCATACACTCGAAGCCATGCGGCTCGGGGGTATTTTTGACCATGCGGGCTATGGCTTTCATCGCTACAGCACCGA CAAGGAATGGCTGCTGCCGCATTTTGAAAAAATGCTCTACGATCAGGCCATGCATGTGCTGGCCTATACCCGCGGCTGGC AGCTGACGGGCAGACCTCTGTTCAGGCGCACCGCAGAAGAAATAATGATGTATGTGATGCGCGACCTGACCTCGCCTCAG GGAGCCTTTTACGCCGCGGAAGATGCCGACAGCGACGCGCCCCCTCATTTTGCCGCCATGGGGCTGCCGCACAGAGGCGA AGGTTTTTTCTACCTTTTCACGCTGCAGGAAATCCGCGGACTGCTTTCCCGGGAAGACGCGCTGCTGGCGGAAAAGATAT GGAACCTGCAGGAAGAAGGTAATTAG
Upstream 100 bases:
>100_bases CGCCCTGCGCGGGGATGATTTTTGCATGCACCAGTGACACAGGCAGAATAATCCGGTTAATGCTTTTCACGCACAGCGAA GACGCCAAAGGGAGTGCCCG
Downstream 100 bases:
>100_bases TCAGTCCTGAAAAACTCTAAAAACGGCCTGTCAGGCGCAAGCCCGTACCGGCCGAACATTGGGTCGGAAAATGTGCCACA GCAATTTGGGGCACAAAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 381; Mature: 380
Protein sequence:
>381_residues MTAQRPNRLINESSPYLLQHARNPVDWHPWGEEAFALARSEDKPVFLSIGYSTCHWCHVMAHESFEDEAVAALLNEAFIN VKVDREDRPDIDSIYMAACQMLTGSGGWPLTIVMTPDGRPFFAATYIPRLSRGGRTGMLELVPRIRDIWRKQRADVTASA DSVAEHMRRHAEGLLRPSSGGAPDDTTVRQAVDTLCQRYDARHGGFGSAPKFPAPHSLLLLLRHAHRTQDAARRAQLTGM VSHTLEAMRLGGIFDHAGYGFHRYSTDKEWLLPHFEKMLYDQAMHVLAYTRGWQLTGRPLFRRTAEEIMMYVMRDLTSPQ GAFYAAEDADSDAPPHFAAMGLPHRGEGFFYLFTLQEIRGLLSREDALLAEKIWNLQEEGN
Sequences:
>Translated_381_residues MTAQRPNRLINESSPYLLQHARNPVDWHPWGEEAFALARSEDKPVFLSIGYSTCHWCHVMAHESFEDEAVAALLNEAFIN VKVDREDRPDIDSIYMAACQMLTGSGGWPLTIVMTPDGRPFFAATYIPRLSRGGRTGMLELVPRIRDIWRKQRADVTASA DSVAEHMRRHAEGLLRPSSGGAPDDTTVRQAVDTLCQRYDARHGGFGSAPKFPAPHSLLLLLRHAHRTQDAARRAQLTGM VSHTLEAMRLGGIFDHAGYGFHRYSTDKEWLLPHFEKMLYDQAMHVLAYTRGWQLTGRPLFRRTAEEIMMYVMRDLTSPQ GAFYAAEDADSDAPPHFAAMGLPHRGEGFFYLFTLQEIRGLLSREDALLAEKIWNLQEEGN >Mature_380_residues TAQRPNRLINESSPYLLQHARNPVDWHPWGEEAFALARSEDKPVFLSIGYSTCHWCHVMAHESFEDEAVAALLNEAFINV KVDREDRPDIDSIYMAACQMLTGSGGWPLTIVMTPDGRPFFAATYIPRLSRGGRTGMLELVPRIRDIWRKQRADVTASAD SVAEHMRRHAEGLLRPSSGGAPDDTTVRQAVDTLCQRYDARHGGFGSAPKFPAPHSLLLLLRHAHRTQDAARRAQLTGMV SHTLEAMRLGGIFDHAGYGFHRYSTDKEWLLPHFEKMLYDQAMHVLAYTRGWQLTGRPLFRRTAEEIMMYVMRDLTSPQG AFYAAEDADSDAPPHFAAMGLPHRGEGFFYLFTLQEIRGLLSREDALLAEKIWNLQEEGN
Specific function: Unknown
COG id: COG1331
COG function: function code O; Highly conserved protein containing a thioredoxin domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To C.elegans B0495.5 [H]
Homologues:
Organism=Homo sapiens, GI31542723, Length=369, Percent_Identity=45.7994579945799, Blast_Score=330, Evalue=9e-91, Organism=Caenorhabditis elegans, GI25147430, Length=367, Percent_Identity=42.5068119891008, Blast_Score=296, Evalue=1e-80, Organism=Drosophila melanogaster, GI20129985, Length=360, Percent_Identity=44.1666666666667, Blast_Score=307, Evalue=7e-84,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008928 - InterPro: IPR012341 - InterPro: IPR010819 - InterPro: IPR004879 - InterPro: IPR005198 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF03190 DUF255; PF07221 GlcNAc_2-epim; PF03663 Glyco_hydro_76 [H]
EC number: NA
Molecular weight: Translated: 43091; Mature: 42960
Theoretical pI: Translated: 6.70; Mature: 6.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAQRPNRLINESSPYLLQHARNPVDWHPWGEEAFALARSEDKPVFLSIGYSTCHWCHVM CCCCCCCHHHCCCCCHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCHHHHHHHH AHESFEDEAVAALLNEAFINVKVDREDRPDIDSIYMAACQMLTGSGGWPLTIVMTPDGRP HHCCCCHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCC FFAATYIPRLSRGGRTGMLELVPRIRDIWRKQRADVTASADSVAEHMRRHAEGLLRPSSG EEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCC GAPDDTTVRQAVDTLCQRYDARHGGFGSAPKFPAPHSLLLLLRHAHRTQDAARRAQLTGM CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH VSHTLEAMRLGGIFDHAGYGFHRYSTDKEWLLPHFEKMLYDQAMHVLAYTRGWQLTGRPL HHHHHHHHHHCCHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH FRRTAEEIMMYVMRDLTSPQGAFYAAEDADSDAPPHFAAMGLPHRGEGFFYLFTLQEIRG HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCCCEEEEEEHHHHHH LLSREDALLAEKIWNLQEEGN HHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TAQRPNRLINESSPYLLQHARNPVDWHPWGEEAFALARSEDKPVFLSIGYSTCHWCHVM CCCCCCHHHCCCCCHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCHHHHHHHH AHESFEDEAVAALLNEAFINVKVDREDRPDIDSIYMAACQMLTGSGGWPLTIVMTPDGRP HHCCCCHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCC FFAATYIPRLSRGGRTGMLELVPRIRDIWRKQRADVTASADSVAEHMRRHAEGLLRPSSG EEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCC GAPDDTTVRQAVDTLCQRYDARHGGFGSAPKFPAPHSLLLLLRHAHRTQDAARRAQLTGM CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH VSHTLEAMRLGGIFDHAGYGFHRYSTDKEWLLPHFEKMLYDQAMHVLAYTRGWQLTGRPL HHHHHHHHHHCCHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH FRRTAEEIMMYVMRDLTSPQGAFYAAEDADSDAPPHFAAMGLPHRGEGFFYLFTLQEIRG HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCCCEEEEEEHHHHHH LLSREDALLAEKIWNLQEEGN HHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377 [H]