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The map label for this gene is ypdB [H]

Identifier: 78357863

GI number: 78357863

Start: 2806277

End: 2807191

Strand: Direct

Name: ypdB [H]

Synonym: Dde_2822

Alternate gene names: 78357863

Gene position: 2806277-2807191 (Clockwise)

Preceding gene: 78357862

Following gene: 78357864

Centisome position: 75.23

GC content: 57.81

Gene sequence:

>915_bases
ATGCCCAGACTGACATCGCTCATTCTGCATCCGGACGCTGCCGTCCGGCACAGCCTGCGTGCGCATGTTTCGCAGGTACC
CTTTCTGCGCGTGGTGGGCGAAGCGGTATGTGCAAACGAGGCGCAGGAACTGCTGAACGCCATCCATTACGGTGCGGTGT
TCTGCGGGGTAGACCTGCAGCAGCCGGAGCAGGGGCTGGAATTCGCCCAGCGACTTATGGGCCGCAGGCACCGTCCGGCA
CTGGTGTTCATTGCTTCCGACGAAACCCATGCCTTTGCCGGATTCGAGCTGGATGCCACCGACTACCTCATCTGGCCATG
TACGGCGCAGCGTTTTTCCAGAACAATTGCCCGGCTGCGGCAGTTCTGCAGCCACTTCAAGCTGGCGCCCGACCCGGAAA
CCCGCTGGAACGAAAAAGCCGCGCCCGCACCCGCCGGTACAGCGGGACACGGCCTTCAGGCCGATACCACGGCAGAAGAC
GATGCAACAGTTCAGGTACCGCTGGCTGACGACGAACAGGACGGCTTTCTGGATGCGCTGAAACAGGCATGGGACTACAA
CAGCACCTACCGCCCTGTAGAAATAGAAAAACTGGCCATCACTTACGAAGGCAAAACCCTGCTGCTGCCCTATGACGAAA
TAGTTTTTGTGGAAGCCTACGAAGACTATACCTATGTACACACGGCCGAGCAGAAGTATCTGACCTCGTACCGGCTTAAA
ATTCTTGAAGGCAAACTCAAACCGCACCGTTTTTTCAGAGTGCACCGCAAGTATCTGGTCAATCTGAATATGGTCACGGA
AATCGCTTCGCTGCCCGGTTCCAGCTTTATGCTGCGCACCGCAGGCCGCACACGGATCGAACTGCCCATCAGCCGCCGGC
GCATCGGCGAACTCAAACAGGTTCTGGGATTGTAA

Upstream 100 bases:

>100_bases
GCGAGACAGGTGACTGCCTGCACAAACAGTCCATTATGCTTCACAGAAGTCGGCAGGCCGTGTACAGTCTTGAAAACCTT
ATTCTTCTGTCAGGATATCA

Downstream 100 bases:

>100_bases
CCATGTCCGCCAAACAACCGCTATGCACCGCCCCTGAAGGTTCAGGAACTCTGGACACCCTGCTGTGCGAAGAACGTGTG
TTCCGGCCCATGCCGCGCAT

Product: response regulator receiver domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MPRLTSLILHPDAAVRHSLRAHVSQVPFLRVVGEAVCANEAQELLNAIHYGAVFCGVDLQQPEQGLEFAQRLMGRRHRPA
LVFIASDETHAFAGFELDATDYLIWPCTAQRFSRTIARLRQFCSHFKLAPDPETRWNEKAAPAPAGTAGHGLQADTTAED
DATVQVPLADDEQDGFLDALKQAWDYNSTYRPVEIEKLAITYEGKTLLLPYDEIVFVEAYEDYTYVHTAEQKYLTSYRLK
ILEGKLKPHRFFRVHRKYLVNLNMVTEIASLPGSSFMLRTAGRTRIELPISRRRIGELKQVLGL

Sequences:

>Translated_304_residues
MPRLTSLILHPDAAVRHSLRAHVSQVPFLRVVGEAVCANEAQELLNAIHYGAVFCGVDLQQPEQGLEFAQRLMGRRHRPA
LVFIASDETHAFAGFELDATDYLIWPCTAQRFSRTIARLRQFCSHFKLAPDPETRWNEKAAPAPAGTAGHGLQADTTAED
DATVQVPLADDEQDGFLDALKQAWDYNSTYRPVEIEKLAITYEGKTLLLPYDEIVFVEAYEDYTYVHTAEQKYLTSYRLK
ILEGKLKPHRFFRVHRKYLVNLNMVTEIASLPGSSFMLRTAGRTRIELPISRRRIGELKQVLGL
>Mature_303_residues
PRLTSLILHPDAAVRHSLRAHVSQVPFLRVVGEAVCANEAQELLNAIHYGAVFCGVDLQQPEQGLEFAQRLMGRRHRPAL
VFIASDETHAFAGFELDATDYLIWPCTAQRFSRTIARLRQFCSHFKLAPDPETRWNEKAAPAPAGTAGHGLQADTTAEDD
ATVQVPLADDEQDGFLDALKQAWDYNSTYRPVEIEKLAITYEGKTLLLPYDEIVFVEAYEDYTYVHTAEQKYLTSYRLKI
LEGKLKPHRFFRVHRKYLVNLNMVTEIASLPGSSFMLRTAGRTRIELPISRRRIGELKQVLGL

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=277, Percent_Identity=24.187725631769, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 34454; Mature: 34323

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRLTSLILHPDAAVRHSLRAHVSQVPFLRVVGEAVCANEAQELLNAIHYGAVFCGVDLQ
CCCHHEEEECCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC
QPEQGLEFAQRLMGRRHRPALVFIASDETHAFAGFELDATDYLIWPCTAQRFSRTIARLR
CCHHHHHHHHHHHCCCCCCEEEEEECCCCCEEECEEECCCCEEEECCCHHHHHHHHHHHH
QFCSHFKLAPDPETRWNEKAAPAPAGTAGHGLQADTTAEDDATVQVPLADDEQDGFLDAL
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHH
KQAWDYNSTYRPVEIEKLAITYEGKTLLLPYDEIVFVEAYEDYTYVHTAEQKYLTSYRLK
HHHHCCCCCCCCEEEEEEEEEECCCEEEECCCCEEEEEEECCEEEEEEHHHHHHHHHHHH
ILEGKLKPHRFFRVHRKYLVNLNMVTEIASLPGSSFMLRTAGRTRIELPISRRRIGELKQ
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEECCHHHHHHHHHHH
VLGL
HHCC
>Mature Secondary Structure 
PRLTSLILHPDAAVRHSLRAHVSQVPFLRVVGEAVCANEAQELLNAIHYGAVFCGVDLQ
CCHHEEEECCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC
QPEQGLEFAQRLMGRRHRPALVFIASDETHAFAGFELDATDYLIWPCTAQRFSRTIARLR
CCHHHHHHHHHHHCCCCCCEEEEEECCCCCEEECEEECCCCEEEECCCHHHHHHHHHHHH
QFCSHFKLAPDPETRWNEKAAPAPAGTAGHGLQADTTAEDDATVQVPLADDEQDGFLDAL
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHH
KQAWDYNSTYRPVEIEKLAITYEGKTLLLPYDEIVFVEAYEDYTYVHTAEQKYLTSYRLK
HHHHCCCCCCCCEEEEEEEEEECCCEEEECCCCEEEEEEECCEEEEEEHHHHHHHHHHHH
ILEGKLKPHRFFRVHRKYLVNLNMVTEIASLPGSSFMLRTAGRTRIELPISRRRIGELKQ
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEECCHHHHHHHHHHH
VLGL
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]