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The map label for this gene is ybcK [H]

Identifier: 78357816

GI number: 78357816

Start: 2776921

End: 2778855

Strand: Direct

Name: ybcK [H]

Synonym: Dde_2774

Alternate gene names: 78357816

Gene position: 2776921-2778855 (Clockwise)

Preceding gene: 78357814

Following gene: 78357817

Centisome position: 74.44

GC content: 49.04

Gene sequence:

>1935_bases
ATGTTTCGGCCTTCAGAAAGAAGAAGGAGGAGGAACAAATCAACTATGGCAGTCGATAACACACACAACCCACATACTCA
TGACCATACGGCGACGACCGCCACCACCAGCAACACAGCAACCGCGCACTATAGCCACCTCAAGCCCAAGGCATACAGCT
ATCTCCGCTTCTCAACTCCCGACCAGATGAAAGGCGACAGCTTCAGGCGACAGACTGAATTAAGTCGCATGTACGCCGAA
GAAAATGGCTTGGACCTCGACGACACTCTAACTTTTCAAGACCTAGGTGTTTCAGCTTTTCGCGGAAAAAACGCCGAAGA
AGGTGAACTAGGTGCGTTCATTGAAGCTGTGGACCAAGGGAAGGTCAAGCGCGGTTCTTTCTTGCTTGTTGAAAGCCTCG
ACCGTCTTTCACGACAATCGCCATACAAGGCTTTCCTTCAGTTCTCAAACATCCTTAACAGGGGCTTGAGCATCGTCACC
CTTCAGGATGGAAAGGTTTATTCAGCAGGGAGCAACGGCAACGACTTGGCTTTCTCCGACCTCATGGTTTCAATTGCCGT
GATGCAACGCGCCTATGAAGAATCACTAACTAAGTCGCGCCGCTTGTCTGAAGTATGGAAGGCCAAGCGGAGAAAAGCCG
CTGACGGTTCATTGAAGCTGACTTCACGCTGTCCTGAATGGCTCAAACTCGACAAGAAGAACAACACGTTCCACGTCATT
GAAGAGCGCGCCGCCATTGTCCAACGTATATTTGAAATGACCTTGGACGGCATAGGCAAGCGCGTCATTGCCGCCACATT
CAATGCTGAAGGAATAAAACCGTTTGGACGTGGCAAAGGCTGGCACTACTCATACGTGACCAAGATTCTTGAGAATGAGG
CGACTATAGGACGTTACCAGCCACACAAGATGCAAGAGGTTCAGGGGAAGAGAAAACGTGTTCCGGTAGGTGAACCCATT
GAAAATTACTTCCCCGCTGTTATCAGTGAAGAAACATTTCTCAAGGCAAAGCGTATGCGGAAGGAAAGAAAGATAGCAGG
GGCTAACGTGGGAAACAGGTATTCCAATCTTTTTTCAGGGCTTGCCGTGTGCGGCGTATGCGGCGGTGTGATGCACTTCG
AGAACAAGGGGAAGCCGCCTAAAGGTGGTACATACCTTGTCTGCTCTAACGCAAGAATGAAGCTAGGTTGTAAGCGTTAC
TCATGGCGTTACCCACAGGCACAGGCACATATCCTCATGAACCTGACAGAACTTAACTACCGTGAATTGTTCCCTACTCT
TTACGAAAAAAGCCGTGAGAGCGTCGAGAGGCTTCAAGATAAGCTGTTAGTCATGGAAGAGCGTTTAAAGGCCACAGAAG
CAAAATTAGAGCGTCTTACAAACATCCTGATTGAACGGCCTCACAGTTCAACCCTGCTTACCCGTCTCGACGCTTTAGAA
GAAGAAAAGCAAGGGCTTATCGTAGGAATTGAAAAAGCAGCGCGTGACTTGTCTGAAGAACAAGAGCGTGTCGAAGGGGC
AGGCAAGGAATACGAGGAACTGGAAGACGCGCTTCAACGGTATATCGAGATTGAGGAAGCAGGAGAACCCGACGCAATCT
TAGAAGCAAGGCGGCGACTGTTCCAGCTTCTCAAGCAGGTAATTGAAAGTATTACCTTCATGCCTGCCAGTAGCAATGAC
AAAGACGAAAAGCCGGAACTGGATTATCAAGGGAACCCCATTCACGGAACTATCGAAATCCGCTTTCGTGGTGTGACTGA
CTATTCACGTCGTATTAAGGTCGCTGGCAATCAGGAAGATTCAAGGGGCTTCAAGATCATCTTCAACGAAAAGGGTGAGG
TCTCCGAGGAAGAAGAGCAAACGATTATTGTCGATGCGCAGTGGCCCCCTAGGGATAGGATAGTCACAGCGAGCTTTGTT
GCAGATTTGTTGTAA

Upstream 100 bases:

>100_bases
GGCAGAACCGTGGGAATACGCTGCGCGAGCATGGTCTTGCCACTGCCGGGAGGGCCGATCATCAGCAAGTTGTGTCTTGA
ATACCCGAAAGCCTCTTGAT

Downstream 100 bases:

>100_bases
GGCAAAATGAAACGAAATAATCGGGGAATTTCTCCACGAAAAGACGACAACTTCACGCTGGCCTTTCGAGCACAGCCGTG
CATGAAAAATAATATATTAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 644; Mature: 644

Protein sequence:

>644_residues
MFRPSERRRRRNKSTMAVDNTHNPHTHDHTATTATTSNTATAHYSHLKPKAYSYLRFSTPDQMKGDSFRRQTELSRMYAE
ENGLDLDDTLTFQDLGVSAFRGKNAEEGELGAFIEAVDQGKVKRGSFLLVESLDRLSRQSPYKAFLQFSNILNRGLSIVT
LQDGKVYSAGSNGNDLAFSDLMVSIAVMQRAYEESLTKSRRLSEVWKAKRRKAADGSLKLTSRCPEWLKLDKKNNTFHVI
EERAAIVQRIFEMTLDGIGKRVIAATFNAEGIKPFGRGKGWHYSYVTKILENEATIGRYQPHKMQEVQGKRKRVPVGEPI
ENYFPAVISEETFLKAKRMRKERKIAGANVGNRYSNLFSGLAVCGVCGGVMHFENKGKPPKGGTYLVCSNARMKLGCKRY
SWRYPQAQAHILMNLTELNYRELFPTLYEKSRESVERLQDKLLVMEERLKATEAKLERLTNILIERPHSSTLLTRLDALE
EEKQGLIVGIEKAARDLSEEQERVEGAGKEYEELEDALQRYIEIEEAGEPDAILEARRRLFQLLKQVIESITFMPASSND
KDEKPELDYQGNPIHGTIEIRFRGVTDYSRRIKVAGNQEDSRGFKIIFNEKGEVSEEEEQTIIVDAQWPPRDRIVTASFV
ADLL

Sequences:

>Translated_644_residues
MFRPSERRRRRNKSTMAVDNTHNPHTHDHTATTATTSNTATAHYSHLKPKAYSYLRFSTPDQMKGDSFRRQTELSRMYAE
ENGLDLDDTLTFQDLGVSAFRGKNAEEGELGAFIEAVDQGKVKRGSFLLVESLDRLSRQSPYKAFLQFSNILNRGLSIVT
LQDGKVYSAGSNGNDLAFSDLMVSIAVMQRAYEESLTKSRRLSEVWKAKRRKAADGSLKLTSRCPEWLKLDKKNNTFHVI
EERAAIVQRIFEMTLDGIGKRVIAATFNAEGIKPFGRGKGWHYSYVTKILENEATIGRYQPHKMQEVQGKRKRVPVGEPI
ENYFPAVISEETFLKAKRMRKERKIAGANVGNRYSNLFSGLAVCGVCGGVMHFENKGKPPKGGTYLVCSNARMKLGCKRY
SWRYPQAQAHILMNLTELNYRELFPTLYEKSRESVERLQDKLLVMEERLKATEAKLERLTNILIERPHSSTLLTRLDALE
EEKQGLIVGIEKAARDLSEEQERVEGAGKEYEELEDALQRYIEIEEAGEPDAILEARRRLFQLLKQVIESITFMPASSND
KDEKPELDYQGNPIHGTIEIRFRGVTDYSRRIKVAGNQEDSRGFKIIFNEKGEVSEEEEQTIIVDAQWPPRDRIVTASFV
ADLL
>Mature_644_residues
MFRPSERRRRRNKSTMAVDNTHNPHTHDHTATTATTSNTATAHYSHLKPKAYSYLRFSTPDQMKGDSFRRQTELSRMYAE
ENGLDLDDTLTFQDLGVSAFRGKNAEEGELGAFIEAVDQGKVKRGSFLLVESLDRLSRQSPYKAFLQFSNILNRGLSIVT
LQDGKVYSAGSNGNDLAFSDLMVSIAVMQRAYEESLTKSRRLSEVWKAKRRKAADGSLKLTSRCPEWLKLDKKNNTFHVI
EERAAIVQRIFEMTLDGIGKRVIAATFNAEGIKPFGRGKGWHYSYVTKILENEATIGRYQPHKMQEVQGKRKRVPVGEPI
ENYFPAVISEETFLKAKRMRKERKIAGANVGNRYSNLFSGLAVCGVCGGVMHFENKGKPPKGGTYLVCSNARMKLGCKRY
SWRYPQAQAHILMNLTELNYRELFPTLYEKSRESVERLQDKLLVMEERLKATEAKLERLTNILIERPHSSTLLTRLDALE
EEKQGLIVGIEKAARDLSEEQERVEGAGKEYEELEDALQRYIEIEEAGEPDAILEARRRLFQLLKQVIESITFMPASSND
KDEKPELDYQGNPIHGTIEIRFRGVTDYSRRIKVAGNQEDSRGFKIIFNEKGEVSEEEEQTIIVDAQWPPRDRIVTASFV
ADLL

Specific function: Unknown

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 recombinase domain [H]

Homologues:

Organism=Escherichia coli, GI1786756, Length=402, Percent_Identity=32.5870646766169, Blast_Score=193, Evalue=2e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011109
- InterPro:   IPR006119 [H]

Pfam domain/function: PF07508 Recombinase; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 73413; Mature: 73413

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRPSERRRRRNKSTMAVDNTHNPHTHDHTATTATTSNTATAHYSHLKPKAYSYLRFSTP
CCCCCHHHHHCCCCCEEECCCCCCCCCCCCCCEEECCCCCCHHHHHCCCCHHHEEEECCC
DQMKGDSFRRQTELSRMYAEENGLDLDDTLTFQDLGVSAFRGKNAEEGELGAFIEAVDQG
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCHHHCCCCCCCCHHHHHHHHHHCC
KVKRGSFLLVESLDRLSRQSPYKAFLQFSNILNRGLSIVTLQDGKVYSAGSNGNDLAFSD
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEECCCCCCCHHHHH
LMVSIAVMQRAYEESLTKSRRLSEVWKAKRRKAADGSLKLTSRCPEWLKLDKKNNTFHVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHCCCHHHEECCCCCEEEHH
EERAAIVQRIFEMTLDGIGKRVIAATFNAEGIKPFGRGKGWHYSYVTKILENEATIGRYQ
HHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
PHKMQEVQGKRKRVPVGEPIENYFPAVISEETFLKAKRMRKERKIAGANVGNRYSNLFSG
CHHHHHHCCHHCCCCCCCCHHHHCCHHHCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
LAVCGVCGGVMHFENKGKPPKGGTYLVCSNARMKLGCKRYSWRYPQAQAHILMNLTELNY
HHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEECCHHCCCCCCCHHHHHEEEHHHCCH
RELFPTLYEKSRESVERLQDKLLVMEERLKATEAKLERLTNILIERPHSSTLLTRLDALE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
EEKQGLIVGIEKAARDLSEEQERVEGAGKEYEELEDALQRYIEIEEAGEPDAILEARRRL
HHCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
FQLLKQVIESITFMPASSNDKDEKPELDYQGNPIHGTIEIRFRGVTDYSRRIKVAGNQED
HHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEEEECCCCCC
SRGFKIIFNEKGEVSEEEEQTIIVDAQWPPRDRIVTASFVADLL
CCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCEEEHHHHHHHC
>Mature Secondary Structure
MFRPSERRRRRNKSTMAVDNTHNPHTHDHTATTATTSNTATAHYSHLKPKAYSYLRFSTP
CCCCCHHHHHCCCCCEEECCCCCCCCCCCCCCEEECCCCCCHHHHHCCCCHHHEEEECCC
DQMKGDSFRRQTELSRMYAEENGLDLDDTLTFQDLGVSAFRGKNAEEGELGAFIEAVDQG
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCHHHCCCCCCCCHHHHHHHHHHCC
KVKRGSFLLVESLDRLSRQSPYKAFLQFSNILNRGLSIVTLQDGKVYSAGSNGNDLAFSD
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEECCCCCCCHHHHH
LMVSIAVMQRAYEESLTKSRRLSEVWKAKRRKAADGSLKLTSRCPEWLKLDKKNNTFHVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHCCCHHHEECCCCCEEEHH
EERAAIVQRIFEMTLDGIGKRVIAATFNAEGIKPFGRGKGWHYSYVTKILENEATIGRYQ
HHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
PHKMQEVQGKRKRVPVGEPIENYFPAVISEETFLKAKRMRKERKIAGANVGNRYSNLFSG
CHHHHHHCCHHCCCCCCCCHHHHCCHHHCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
LAVCGVCGGVMHFENKGKPPKGGTYLVCSNARMKLGCKRYSWRYPQAQAHILMNLTELNY
HHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEECCHHCCCCCCCHHHHHEEEHHHCCH
RELFPTLYEKSRESVERLQDKLLVMEERLKATEAKLERLTNILIERPHSSTLLTRLDALE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
EEKQGLIVGIEKAARDLSEEQERVEGAGKEYEELEDALQRYIEIEEAGEPDAILEARRRL
HHCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
FQLLKQVIESITFMPASSNDKDEKPELDYQGNPIHGTIEIRFRGVTDYSRRIKVAGNQED
HHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEEEECCCCCC
SRGFKIIFNEKGEVSEEEEQTIIVDAQWPPRDRIVTASFVADLL
CCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCEEEHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]