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The map label for this gene is tdcF [C]

Identifier: 78357624

GI number: 78357624

Start: 2599086

End: 2599475

Strand: Reverse

Name: tdcF [C]

Synonym: Dde_2582

Alternate gene names: 78357624

Gene position: 2599475-2599086 (Counterclockwise)

Preceding gene: 78357631

Following gene: 78357623

Centisome position: 69.69

GC content: 54.87

Gene sequence:

>390_bases
GTGTCTGCAAAAAAAGCCATTGCCACAACCAAGGCACCGGGAGCCGTAGGCCCGTATTCTCAGGCTATACTTTCCGGCGA
CCTGCTTTTTCTTTCCGGTCAGCTGCCCATCAATCCGCAGACCGGCACCATGCCCGAAGGCGATATCCGCGATCGGGTCC
ATCAGATTTTCGCCAACATCAAAGCCGTGGCAGAAAGTGCAGGGGCATCGCTGGATGACGTGGTCAAAGTAACCGTGTTT
CTGGCCGATATCAGTGACTTTGCCGCTGTCAACGAAGTGTACGCGCAATATTTTTCAACACCGTATCCGGCCCGCAGCGC
CGTGCAGGTGGCTGCACTGCCTCTGAAGGCCGATGTGGAAATAGAAGCAATCATCAGGATTGCCGAATAG

Upstream 100 bases:

>100_bases
ACACGAGATGGTTTTCAGGCTCAGTCGTATTAATGAAAATTGTCGACAATCGACATTGTGACATGCGATGTGAAATTTTT
ACCAAGCAAAGGAGGCCGTT

Downstream 100 bases:

>100_bases
TAACAGGATGAGGTGATATCATGAATCTGGCAAAATTCCCCCGCCGCGGCTATGTGCAGCAGGCAACTCCCATCGAAAAA
CTGGATAACTTTTCCGCCGC

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MSAKKAIATTKAPGAVGPYSQAILSGDLLFLSGQLPINPQTGTMPEGDIRDRVHQIFANIKAVAESAGASLDDVVKVTVF
LADISDFAAVNEVYAQYFSTPYPARSAVQVAALPLKADVEIEAIIRIAE

Sequences:

>Translated_129_residues
MSAKKAIATTKAPGAVGPYSQAILSGDLLFLSGQLPINPQTGTMPEGDIRDRVHQIFANIKAVAESAGASLDDVVKVTVF
LADISDFAAVNEVYAQYFSTPYPARSAVQVAALPLKADVEIEAIIRIAE
>Mature_128_residues
SAKKAIATTKAPGAVGPYSQAILSGDLLFLSGQLPINPQTGTMPEGDIRDRVHQIFANIKAVAESAGASLDDVVKVTVFL
ADISDFAAVNEVYAQYFSTPYPARSAVQVAALPLKADVEIEAIIRIAE

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=121, Percent_Identity=46.2809917355372, Blast_Score=125, Evalue=8e-30,
Organism=Escherichia coli, GI87082213, Length=124, Percent_Identity=49.1935483870968, Blast_Score=128, Evalue=1e-31,
Organism=Escherichia coli, GI87082396, Length=123, Percent_Identity=46.3414634146341, Blast_Score=117, Evalue=3e-28,
Organism=Escherichia coli, GI1787245, Length=114, Percent_Identity=28.9473684210526, Blast_Score=68, Evalue=2e-13,
Organism=Escherichia coli, GI1790696, Length=113, Percent_Identity=40.7079646017699, Blast_Score=67, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI25148896, Length=121, Percent_Identity=52.8925619834711, Blast_Score=135, Evalue=5e-33,
Organism=Caenorhabditis elegans, GI71982075, Length=121, Percent_Identity=52.8925619834711, Blast_Score=135, Evalue=5e-33,
Organism=Caenorhabditis elegans, GI71982068, Length=121, Percent_Identity=52.8925619834711, Blast_Score=135, Evalue=6e-33,
Organism=Saccharomyces cerevisiae, GI6320899, Length=99, Percent_Identity=55.5555555555556, Blast_Score=112, Evalue=1e-26,
Organism=Saccharomyces cerevisiae, GI6322138, Length=118, Percent_Identity=44.0677966101695, Blast_Score=111, Evalue=3e-26,
Organism=Drosophila melanogaster, GI19921376, Length=121, Percent_Identity=41.3223140495868, Blast_Score=100, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13590; Mature: 13458

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAKKAIATTKAPGAVGPYSQAILSGDLLFLSGQLPINPQTGTMPEGDIRDRVHQIFANI
CCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
KAVAESAGASLDDVVKVTVFLADISDFAAVNEVYAQYFSTPYPARSAVQVAALPLKADVE
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCE
IEAIIRIAE
EEHEEEECC
>Mature Secondary Structure 
SAKKAIATTKAPGAVGPYSQAILSGDLLFLSGQLPINPQTGTMPEGDIRDRVHQIFANI
CCCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
KAVAESAGASLDDVVKVTVFLADISDFAAVNEVYAQYFSTPYPARSAVQVAALPLKADVE
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCE
IEAIIRIAE
EEHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]