Click here to switch to the map view.

The map label for this gene is rnpA

Identifier: 78357439

GI number: 78357439

Start: 2420068

End: 2420445

Strand: Reverse

Name: rnpA

Synonym: Dde_2396

Alternate gene names: 78357439

Gene position: 2420445-2420068 (Counterclockwise)

Preceding gene: 78357441

Following gene: 78357438

Centisome position: 64.89

GC content: 58.99

Gene sequence:

>378_bases
GTGCTGGCTCGTCCAAGTCGTTTGACACGGCGGCCTGATTACGTAGCCTGCTACAATACAGGCCGCCGTTACTTTTCTAA
GCATTTCATCGTATTTGCCCTTGAACGAGAGGGTGCCGCGCCGGTGTGGCGCTACGGGCTCGCCGTGAGCCGCAAGGTGG
GAGACGCTGTCCGCCGCAACAGGACAAAGCGTGTTCTCAGAGAATTTTTCCGCCTTTATCAGGATGATATGCCGGGGGGC
ATGGACTTAGTTGTTGTGCCCAAGCGCCGCCTCGATCCAAGGCGTGTAACGCTTGATCTTGCCGTGCAGGAGCTGCTGCC
CCTGATGCGCGAGATCCGCGACAGCCTGTGCCGCGAGGCTAATGACGGAACGCCATGA

Upstream 100 bases:

>100_bases
GGAAAAGAACTCACGGTTTTCGTGCTCGTTCCAGCAGCCCCAGTGGCCGCGCTATTCTGCGCCGCAGAAGAGCCAAGGGC
AGAGCTAAGCTGTCTGCATA

Downstream 100 bases:

>100_bases
CCATCGAACTGCGCAAAATCGCGATCCTTCCCATCAGGTTTTATCAGCGTTTCATCTCGCCGCTATTCCCGCCGTCGTGC
CGTTTTGTTCCCACCTGTTC

Product: ribonuclease P protein component

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MLARPSRLTRRPDYVACYNTGRRYFSKHFIVFALEREGAAPVWRYGLAVSRKVGDAVRRNRTKRVLREFFRLYQDDMPGG
MDLVVVPKRRLDPRRVTLDLAVQELLPLMREIRDSLCREANDGTP

Sequences:

>Translated_125_residues
MLARPSRLTRRPDYVACYNTGRRYFSKHFIVFALEREGAAPVWRYGLAVSRKVGDAVRRNRTKRVLREFFRLYQDDMPGG
MDLVVVPKRRLDPRRVTLDLAVQELLPLMREIRDSLCREANDGTP
>Mature_125_residues
MLARPSRLTRRPDYVACYNTGRRYFSKHFIVFALEREGAAPVWRYGLAVSRKVGDAVRRNRTKRVLREFFRLYQDDMPGG
MDLVVVPKRRLDPRRVTLDLAVQELLPLMREIRDSLCREANDGTP

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_DESDG (Q30YQ3)

Other databases:

- EMBL:   CP000112
- RefSeq:   YP_388888.1
- ProteinModelPortal:   Q30YQ3
- SMR:   Q30YQ3
- STRING:   Q30YQ3
- GeneID:   3757412
- GenomeReviews:   CP000112_GR
- KEGG:   dde:Dde_2396
- eggNOG:   COG0594
- HOGENOM:   HBG728160
- OMA:   LRQDATR
- ProtClustDB:   CLSK2397042
- BioCyc:   DDES207559:DDE_2396-MONOMER
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- Gene3D:   G3DSA:3.30.230.10
- ProDom:   PD003629
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 14652; Mature: 14652

Theoretical pI: Translated: 11.09; Mature: 11.09

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLARPSRLTRRPDYVACYNTGRRYFSKHFIVFALEREGAAPVWRYGLAVSRKVGDAVRRN
CCCCCCCCCCCCCEEEEEHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
RTKRVLREFFRLYQDDMPGGMDLVVVPKRRLDPRRVTLDLAVQELLPLMREIRDSLCREA
HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
NDGTP
CCCCC
>Mature Secondary Structure
MLARPSRLTRRPDYVACYNTGRRYFSKHFIVFALEREGAAPVWRYGLAVSRKVGDAVRRN
CCCCCCCCCCCCCEEEEEHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
RTKRVLREFFRLYQDDMPGGMDLVVVPKRRLDPRRVTLDLAVQELLPLMREIRDSLCREA
HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
NDGTP
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA