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The map label for this gene is yhgF [C]

Identifier: 78357359

GI number: 78357359

Start: 2332138

End: 2334360

Strand: Direct

Name: yhgF [C]

Synonym: Dde_2316

Alternate gene names: 78357359

Gene position: 2332138-2334360 (Clockwise)

Preceding gene: 78357357

Following gene: 78357370

Centisome position: 62.52

GC content: 60.46

Gene sequence:

>2223_bases
ATGTCCAGCACCCAGATACAACCCGTAACCACAGAGAACTTCATGTCGCAGCATATACAAATCCTCTCCGCAGAACTCGG
CGTTCCGCGCTCCGGCATCACCGCCGCCGCAGCCCTGCTGGACGAAGGAGCCACAGTGCCCTTCATCAGCCGTTACCGCA
AGGAAGCCACCGGCGGGCTGGATGAAACCGTCATCACCGCCATACGCGACGGCATGACCAGACTGCGCGCTCTGGACAAA
CGTCGCGAAGCGGTCATTGCCTCGTTGCAGGAACGCGACCTGCTGACTGCCGAACTGCACGGTGCGGTTATGCAGGCAGC
CACCATGACCGCGCTGGAAGACGTATACCTGCCGTACAAGCCCAAACGCCGCACCCGTGCACAGATGGCGCGGGAACGCG
GACTGGAACCGCTGGCAGACCTGCTGATGCAGCAGCGCGGACGCAGAGTGCACGACGATGCACTTGCATTTATCACTCCG
GACGGCACCCCCAAAGAGACAGCAGTGCCCGATTCCGCATCCGCCCTGGCAGGAGCCAGAGACATAGTGGCCGAACGGAT
AAGCGAAGATACTGCAGCGCGGCAGGCCCTCCGGCAGCTGTTCCGCGAAAAAGGCATAATAAGCTCCGCCGTAAGCAAAG
GGAAAGAAGAGGAAGGCGCCAAATTCCGTGACTGGTTTGCCTGGTCGGAACCTGCGGCCAAGGCTGCGGGCCACCGCATT
CTGGCCCTGCTGCGCGGTGAGCGTGAAGGTGTGCTGACGGTACGGCTGCGCCCTGACGACACGGCTGCGCTGACCCTGCT
CAAACGCCGTTTTCTGAAAAAACAGGTTCCGCTGCACATGCAGGGATCTGAGGAAACCGACAGCGGCAATGTGGTACTGG
CTGTTGAAGACGCATGGAAGCGTCTGCTGATTCCCGCGCTGGAAACGGAAACCATGCATTTTTTCCGTGAACAGGCTGAA
GATCAGGCCATCAGGGTATTCGCCGCCAACTTGCGGGACCTGATGCTGGCACCACCGCTGGGGCAAAAACGTGCGCTGGC
CATGGATCCGGGCTTCCGCACAGGGGTCAAAACCGTGTGTCTGGATGAGCAGGGCGCCCTGCTGCATCACCAGACAATTT
ATCCGCATACCGGAACGGGTAAAGCGCAGGAAGCCGCGTCGGCTGTACGGCGCATGGCGGAACAGTTCGGCATAGAGGCC
ATTGCCATAGGCAACGGTACAGCCGGACGCGAAACAGAGACTTTTGTCAAGGGACTGGGGCTGGCAGACCATATTGCCGT
TGTCATGGTGGACGAGGCAGGCGCCTCTGTCTACTCCGCCTCGGAAACGGCCCGCAGGGAATTTCCCGACCACGATGTCA
CAGTCCGCGGAGCGGTTTCAATCGGGCGCAGACTCATGGACCCGCTGGCCGAACTGGTAAAAATCGACCCCAAAGCCATC
GGCGTAGGGCAGTATCAACATGATGTGAACCAGACCGCGCTGAAACAGGCTCTGGATGATACCGTCATGTCCTGCGTGAA
CCATGTCGGCGTGGAACTCAATACAGCAAGCGCGGAACTGCTTGCCTATGTGTCCGGTCTCGGGCCGGCTCTTGCCAGCG
GCATTGTGGCTTACCGCACTCAGAACGGTCCGTTCAAAAGCCGCAGCCAGCTGCTGAAAGTGCCCCGGCTGGGACCGAAG
GCATTTGAACAGGCAGCGGGGTTTCTGCGCATAGGCACGGCCCTGCACGACGGCAACCCGCTGGACGCCACAGCGGTGCA
CCCCGAAAGCTACCCCGTTGTGGAACGCATGGCTGCAGACGCCGGCACCACCGTCGCCAGCCTCATTGCCGATGCGGGGC
TGCGCGGGGCCATCCGCCCCGAAGCGTATGTCACAGACACCACGGGGCTGCCCACATTGCTGGATATTGTGAACGAACTG
GCAAAACCCGGACGTGACCCCAGGCCGGCCTTCGAGCTGTTCCGCTACGCCGATGTGCATACACTGGATGATCTGCAGGA
AGGCATGGTGCTGCCGGGCGTGGTCACCAATGTGACCGCTTTCGGTGCGTTTGTGGATATAGGCGTACATCAGGACGGAC
TGGTGCATATAAGCCAGCTGGCAGACAAGTTTGTCCGTGATCCTGCAGAGGTTGTCAGGGTGCGTCAGCAGGTGCAGGTG
CGGGTGCTTGAAGTTGATCATAAGCGCAGACGTATCAGCCTGAGCATGAAACAGTCCGTCTGA

Upstream 100 bases:

>100_bases
CTGCAGACACCGCGCACAATCAGACCCGATCCGGACCTGCACGGCGGTTCTGCCCGAAAAACAGTAAACACACACTTACA
TAATAGACATCAGCGGCGCC

Downstream 100 bases:

>100_bases
CAGCAGACTGCAGCGGCATAACACAACTGCGCCCCGCGGCTTTTCTGCCGCGGGGCGCTTTTTGTTATGCATACCTTGTG
CAGGTTGTCAGCGGAGTGAC

Product: RNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 740; Mature: 739

Protein sequence:

>740_residues
MSSTQIQPVTTENFMSQHIQILSAELGVPRSGITAAAALLDEGATVPFISRYRKEATGGLDETVITAIRDGMTRLRALDK
RREAVIASLQERDLLTAELHGAVMQAATMTALEDVYLPYKPKRRTRAQMARERGLEPLADLLMQQRGRRVHDDALAFITP
DGTPKETAVPDSASALAGARDIVAERISEDTAARQALRQLFREKGIISSAVSKGKEEEGAKFRDWFAWSEPAAKAAGHRI
LALLRGEREGVLTVRLRPDDTAALTLLKRRFLKKQVPLHMQGSEETDSGNVVLAVEDAWKRLLIPALETETMHFFREQAE
DQAIRVFAANLRDLMLAPPLGQKRALAMDPGFRTGVKTVCLDEQGALLHHQTIYPHTGTGKAQEAASAVRRMAEQFGIEA
IAIGNGTAGRETETFVKGLGLADHIAVVMVDEAGASVYSASETARREFPDHDVTVRGAVSIGRRLMDPLAELVKIDPKAI
GVGQYQHDVNQTALKQALDDTVMSCVNHVGVELNTASAELLAYVSGLGPALASGIVAYRTQNGPFKSRSQLLKVPRLGPK
AFEQAAGFLRIGTALHDGNPLDATAVHPESYPVVERMAADAGTTVASLIADAGLRGAIRPEAYVTDTTGLPTLLDIVNEL
AKPGRDPRPAFELFRYADVHTLDDLQEGMVLPGVVTNVTAFGAFVDIGVHQDGLVHISQLADKFVRDPAEVVRVRQQVQV
RVLEVDHKRRRISLSMKQSV

Sequences:

>Translated_740_residues
MSSTQIQPVTTENFMSQHIQILSAELGVPRSGITAAAALLDEGATVPFISRYRKEATGGLDETVITAIRDGMTRLRALDK
RREAVIASLQERDLLTAELHGAVMQAATMTALEDVYLPYKPKRRTRAQMARERGLEPLADLLMQQRGRRVHDDALAFITP
DGTPKETAVPDSASALAGARDIVAERISEDTAARQALRQLFREKGIISSAVSKGKEEEGAKFRDWFAWSEPAAKAAGHRI
LALLRGEREGVLTVRLRPDDTAALTLLKRRFLKKQVPLHMQGSEETDSGNVVLAVEDAWKRLLIPALETETMHFFREQAE
DQAIRVFAANLRDLMLAPPLGQKRALAMDPGFRTGVKTVCLDEQGALLHHQTIYPHTGTGKAQEAASAVRRMAEQFGIEA
IAIGNGTAGRETETFVKGLGLADHIAVVMVDEAGASVYSASETARREFPDHDVTVRGAVSIGRRLMDPLAELVKIDPKAI
GVGQYQHDVNQTALKQALDDTVMSCVNHVGVELNTASAELLAYVSGLGPALASGIVAYRTQNGPFKSRSQLLKVPRLGPK
AFEQAAGFLRIGTALHDGNPLDATAVHPESYPVVERMAADAGTTVASLIADAGLRGAIRPEAYVTDTTGLPTLLDIVNEL
AKPGRDPRPAFELFRYADVHTLDDLQEGMVLPGVVTNVTAFGAFVDIGVHQDGLVHISQLADKFVRDPAEVVRVRQQVQV
RVLEVDHKRRRISLSMKQSV
>Mature_739_residues
SSTQIQPVTTENFMSQHIQILSAELGVPRSGITAAAALLDEGATVPFISRYRKEATGGLDETVITAIRDGMTRLRALDKR
REAVIASLQERDLLTAELHGAVMQAATMTALEDVYLPYKPKRRTRAQMARERGLEPLADLLMQQRGRRVHDDALAFITPD
GTPKETAVPDSASALAGARDIVAERISEDTAARQALRQLFREKGIISSAVSKGKEEEGAKFRDWFAWSEPAAKAAGHRIL
ALLRGEREGVLTVRLRPDDTAALTLLKRRFLKKQVPLHMQGSEETDSGNVVLAVEDAWKRLLIPALETETMHFFREQAED
QAIRVFAANLRDLMLAPPLGQKRALAMDPGFRTGVKTVCLDEQGALLHHQTIYPHTGTGKAQEAASAVRRMAEQFGIEAI
AIGNGTAGRETETFVKGLGLADHIAVVMVDEAGASVYSASETARREFPDHDVTVRGAVSIGRRLMDPLAELVKIDPKAIG
VGQYQHDVNQTALKQALDDTVMSCVNHVGVELNTASAELLAYVSGLGPALASGIVAYRTQNGPFKSRSQLLKVPRLGPKA
FEQAAGFLRIGTALHDGNPLDATAVHPESYPVVERMAADAGTTVASLIADAGLRGAIRPEAYVTDTTGLPTLLDIVNELA
KPGRDPRPAFELFRYADVHTLDDLQEGMVLPGVVTNVTAFGAFVDIGVHQDGLVHISQLADKFVRDPAEVVRVRQQVQVR
VLEVDHKRRRISLSMKQSV

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=801, Percent_Identity=31.960049937578, Blast_Score=357, Evalue=2e-98,
Organism=Homo sapiens, GI27597090, Length=502, Percent_Identity=24.7011952191235, Blast_Score=114, Evalue=3e-25,
Organism=Escherichia coli, GI87082262, Length=726, Percent_Identity=49.7245179063361, Blast_Score=647, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=77, Percent_Identity=49.3506493506493, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI145693187, Length=76, Percent_Identity=47.3684210526316, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17511129, Length=735, Percent_Identity=27.4829931972789, Blast_Score=227, Evalue=1e-59,
Organism=Caenorhabditis elegans, GI17552892, Length=551, Percent_Identity=23.956442831216, Blast_Score=108, Evalue=8e-24,
Organism=Saccharomyces cerevisiae, GI6321552, Length=246, Percent_Identity=28.0487804878049, Blast_Score=81, Evalue=8e-16,
Organism=Drosophila melanogaster, GI62484314, Length=752, Percent_Identity=33.2446808510638, Blast_Score=370, Evalue=1e-102,
Organism=Drosophila melanogaster, GI24640080, Length=703, Percent_Identity=21.4793741109531, Blast_Score=103, Evalue=5e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 80448; Mature: 80317

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSTQIQPVTTENFMSQHIQILSAELGVPRSGITAAAALLDEGATVPFISRYRKEATGGL
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCH
DETVITAIRDGMTRLRALDKRREAVIASLQERDLLTAELHGAVMQAATMTALEDVYLPYK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCC
PKRRTRAQMARERGLEPLADLLMQQRGRRVHDDALAFITPDGTPKETAVPDSASALAGAR
CCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHH
DIVAERISEDTAARQALRQLFREKGIISSAVSKGKEEEGAKFRDWFAWSEPAAKAAGHRI
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHCCCCHHHHHHHHHH
LALLRGEREGVLTVRLRPDDTAALTLLKRRFLKKQVPLHMQGSEETDSGNVVLAVEDAWK
HHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEEHHHHH
RLLIPALETETMHFFREQAEDQAIRVFAANLRDLMLAPPLGQKRALAMDPGFRTGVKTVC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCEEEE
LDEQGALLHHQTIYPHTGTGKAQEAASAVRRMAEQFGIEAIAIGNGTAGRETETFVKGLG
ECCCCCEEEECEECCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHCC
LADHIAVVMVDEAGASVYSASETARREFPDHDVTVRGAVSIGRRLMDPLAELVKIDPKAI
CHHCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCC
GVGQYQHDVNQTALKQALDDTVMSCVNHVGVELNTASAELLAYVSGLGPALASGIVAYRT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHCCHHHHCCEEEEEC
QNGPFKSRSQLLKVPRLGPKAFEQAAGFLRIGTALHDGNPLDATAVHPESYPVVERMAAD
CCCCCHHHHHHHHCCCCCHHHHHHHCCHHEECHHCCCCCCCCCEEECCCCCHHHHHHHHC
AGTTVASLIADAGLRGAIRPEAYVTDTTGLPTLLDIVNELAKPGRDPRPAFELFRYADVH
CCHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCH
TLDDLQEGMVLPGVVTNVTAFGAFVDIGVHQDGLVHISQLADKFVRDPAEVVRVRQQVQV
HHHHHHCCCCCCHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH
RVLEVDHKRRRISLSMKQSV
HHEEECCCHHHEECHHHCCC
>Mature Secondary Structure 
SSTQIQPVTTENFMSQHIQILSAELGVPRSGITAAAALLDEGATVPFISRYRKEATGGL
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCH
DETVITAIRDGMTRLRALDKRREAVIASLQERDLLTAELHGAVMQAATMTALEDVYLPYK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCC
PKRRTRAQMARERGLEPLADLLMQQRGRRVHDDALAFITPDGTPKETAVPDSASALAGAR
CCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHH
DIVAERISEDTAARQALRQLFREKGIISSAVSKGKEEEGAKFRDWFAWSEPAAKAAGHRI
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHCCCCHHHHHHHHHH
LALLRGEREGVLTVRLRPDDTAALTLLKRRFLKKQVPLHMQGSEETDSGNVVLAVEDAWK
HHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEEHHHHH
RLLIPALETETMHFFREQAEDQAIRVFAANLRDLMLAPPLGQKRALAMDPGFRTGVKTVC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCEEEE
LDEQGALLHHQTIYPHTGTGKAQEAASAVRRMAEQFGIEAIAIGNGTAGRETETFVKGLG
ECCCCCEEEECEECCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHCC
LADHIAVVMVDEAGASVYSASETARREFPDHDVTVRGAVSIGRRLMDPLAELVKIDPKAI
CHHCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCC
GVGQYQHDVNQTALKQALDDTVMSCVNHVGVELNTASAELLAYVSGLGPALASGIVAYRT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHCCHHHHCCEEEEEC
QNGPFKSRSQLLKVPRLGPKAFEQAAGFLRIGTALHDGNPLDATAVHPESYPVVERMAAD
CCCCCHHHHHHHHCCCCCHHHHHHHCCHHEECHHCCCCCCCCCEEECCCCCHHHHHHHHC
AGTTVASLIADAGLRGAIRPEAYVTDTTGLPTLLDIVNELAKPGRDPRPAFELFRYADVH
CCHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCH
TLDDLQEGMVLPGVVTNVTAFGAFVDIGVHQDGLVHISQLADKFVRDPAEVVRVRQQVQV
HHHHHHCCCCCCHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH
RVLEVDHKRRRISLSMKQSV
HHEEECCCHHHEECHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]