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The map label for this gene is rpmD

Identifier: 78357282

GI number: 78357282

Start: 2274503

End: 2274673

Strand: Reverse

Name: rpmD

Synonym: Dde_2239

Alternate gene names: 78357282

Gene position: 2274673-2274503 (Counterclockwise)

Preceding gene: 78357283

Following gene: 78357281

Centisome position: 60.98

GC content: 56.14

Gene sequence:

>171_bases
ATGATCAAGGTAAAACTCGTCCGCAGCCGGATCGGCTGCAACCCCAACCAGCGTCGTACCCTCGACGCTCTGGGGCTGCG
CAAGATCCGTCAGGAAAAGACGTTTGAGGACAATGCCGTTGTACGCGGCATGATCGCCAAGGTTGTGCATCTCGTCGAGG
TAACGGAATAA

Upstream 100 bases:

>100_bases
GCGCTACCATGGCAGGTCTGACCTCGCTGCGCAGTGCGGAATATGTGAGCCAGCTGCGCGGAAAGAAACTGGAAGCGCCC
AGAAAGTAAGGAATCGGCTC

Downstream 100 bases:

>100_bases
TGAGACTCCACGAACTGTATCCGTTCGATGAAGAACGTAAACAGAGGAAACGCGTGGGCCGTGGCTCCGGTTCCGGCTGG
GGATGTACCTCCGGCAAAGG

Product: 50S ribosomal protein L30

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 56; Mature: 56

Protein sequence:

>56_residues
MIKVKLVRSRIGCNPNQRRTLDALGLRKIRQEKTFEDNAVVRGMIAKVVHLVEVTE

Sequences:

>Translated_56_residues
MIKVKLVRSRIGCNPNQRRTLDALGLRKIRQEKTFEDNAVVRGMIAKVVHLVEVTE
>Mature_56_residues
MIKVKLVRSRIGCNPNQRRTLDALGLRKIRQEKTFEDNAVVRGMIAKVVHLVEVTE

Specific function: Unknown

COG id: COG1841

COG function: function code J; Ribosomal protein L30/L7E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L30P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL30_DESDG (Q30Z60)

Other databases:

- EMBL:   CP000112
- RefSeq:   YP_388731.1
- ProteinModelPortal:   Q30Z60
- SMR:   Q30Z60
- STRING:   Q30Z60
- GeneID:   3757250
- GenomeReviews:   CP000112_GR
- KEGG:   dde:Dde_2239
- NMPDR:   fig|207559.3.peg.2201
- eggNOG:   NOG74699
- HOGENOM:   HBG690556
- OMA:   QRRICAS
- ProtClustDB:   PRK05611
- BioCyc:   DDES207559:DDE_2239-MONOMER
- GO:   GO:0006412
- HAMAP:   MF_01371_B
- InterPro:   IPR005996
- InterPro:   IPR016082
- Gene3D:   G3DSA:3.30.1390.20
- PIRSF:   PIRSF002211
- TIGRFAMs:   TIGR01308

Pfam domain/function: PF00327 Ribosomal_L30; SSF55129 Ribosomal_L30

EC number: NA

Molecular weight: Translated: 6431; Mature: 6431

Theoretical pI: Translated: 11.23; Mature: 11.23

Prosite motif: PS00634 RIBOSOMAL_L30

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKVKLVRSRIGCNPNQRRTLDALGLRKIRQEKTFEDNAVVRGMIAKVVHLVEVTE
CEEHEEEHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIKVKLVRSRIGCNPNQRRTLDALGLRKIRQEKTFEDNAVVRGMIAKVVHLVEVTE
CEEHEEEHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA