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The map label for this gene is rtcB [C]

Identifier: 78357132

GI number: 78357132

Start: 2135079

End: 2136515

Strand: Direct

Name: rtcB [C]

Synonym: Dde_2089

Alternate gene names: 78357132

Gene position: 2135079-2136515 (Clockwise)

Preceding gene: 78357131

Following gene: 78357133

Centisome position: 57.24

GC content: 58.52

Gene sequence:

>1437_bases
ATGTCCCCGCGCAACCAGAACATCCGGCCGGTCAGAAAGGCGGAGAACCGCTGGCGCATCTACCCGGTCGGTACCATGAG
AGTACCCGTGGACATTTTTGCTTCGGAAGCTCTCATATCGGTCATGGATACGGAAACAATACACCAGCTGACAACTGCAG
CCAGTCTGCCCGGTGTCGCCGGTTCCGTCATATGCATGCCCGATGCGCACTCAGGTTATGGATTTCCCATCGGGTGTGTG
GCCGGATTCTGTGCCGGTAAAGAAGGAATTATTTCCGCCGGCGGTGTGGGATACGACATCGGGTGCGGTGTGCGCACTCT
GCTGACAGACATACCTGCCGCAGAAGTGTATGCGCGGCGCGGCGAAATTGCGGACGCTCTGTTCCGTGCCATTCCAGCGG
GGCTGAAAGGAAGCAGTCATTTGTCGCTTAACGCAGAAGAAATAAAACAGATATTGCATGAAGGCGCCGCATGGGCCGTA
CGCAACGGCATGGGCGAAAAGGAAGACCTGTGGCATACAGAGGAAAACGGCTGCGTTGCCGGAGCTGATGCAGCACAGGT
CTCGACCGAAGCCCGGCAAAGACTCACCGGCCAGCTGGGTACTCTGGGGTCAGGCAACCATTATCTTGAAATCCAGATTG
TCGACAGCATCCACGATACCGCTGCAGCGGCGCATTTCGGTCTTGCAGAAAACCAGATTGCCATCAGCATCCACAGCGGC
TCACGGGGCACAGGACACCAGATTGCCACTGACTACATAAAAGCCATGCAAAACGCCCTGCCCGACGGCCACCCCGCACC
GGATCCTTCTCTGGCTTACGCCCCGCTGACATCAGACCTCGGCCGCCGCTATCTGGCCGCCATGAAAGCCGGCCGGAACT
GCGCGCTGGCTAACAGGCAAACCATTGCCCACATGGTGCGCAAAACGTTTCTGCGGCTGTTCCCCTCCTGCCGTATCACC
CAGCTGTATGATGTTTCGCACAACACCTGCAATGAAGAACACCACGTCATCGAGGGCCAGAGCAGACGGCTTTTTGTACA
CCGCAAAGGAGCCACTCGTGCTCTGCCTTCCGGCCATGCAGCCCTCGGCCCCCTGTTCGATGCAACGGGACAGCCTGTGC
TTGTGGGCGGCAGCATGGGCACAGCATCATGGATATTATGTGCCGCCCGGGGAGCAGAGGCCAGCATGTACTCGGCCAAT
CACGGCGCCGGCAGACTGCTCAGCCGCGCTCAGGCACGCAAACGCCAGCAACCCCGCAGTCTTATGGATGCACTGAAGCA
TGCCGGAATCTCGGTAAGAACACACAGCCCGCAACTGCTGGCGGAAGAGGCTCCCTTGGCCTATAAGGATGTGGACCATG
TGACTGATACGGCCTGCGCGACAGGCATTGCCCGCAAAGTGGCAAGACTGCGCCCTCTGATCTGCATAAAAGGATAA

Upstream 100 bases:

>100_bases
GTCATTCCCGGTGACAAACTGTACAACGGGTAACACCGACGAGCACACGCATCATCAACGGGCCGGAACACTCCGGCCTT
TTTTTATTCACGGAGCATGT

Downstream 100 bases:

>100_bases
CGACATGACACAGCTCGTAACAGGCTGCACACTCGACTGTCCGGACTGCTGCTCCATGGTGGCCGTACCCCGGCAAGACG
GCACCCTGTCCATACAGGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 477

Protein sequence:

>478_residues
MSPRNQNIRPVRKAENRWRIYPVGTMRVPVDIFASEALISVMDTETIHQLTTAASLPGVAGSVICMPDAHSGYGFPIGCV
AGFCAGKEGIISAGGVGYDIGCGVRTLLTDIPAAEVYARRGEIADALFRAIPAGLKGSSHLSLNAEEIKQILHEGAAWAV
RNGMGEKEDLWHTEENGCVAGADAAQVSTEARQRLTGQLGTLGSGNHYLEIQIVDSIHDTAAAAHFGLAENQIAISIHSG
SRGTGHQIATDYIKAMQNALPDGHPAPDPSLAYAPLTSDLGRRYLAAMKAGRNCALANRQTIAHMVRKTFLRLFPSCRIT
QLYDVSHNTCNEEHHVIEGQSRRLFVHRKGATRALPSGHAALGPLFDATGQPVLVGGSMGTASWILCAARGAEASMYSAN
HGAGRLLSRAQARKRQQPRSLMDALKHAGISVRTHSPQLLAEEAPLAYKDVDHVTDTACATGIARKVARLRPLICIKG

Sequences:

>Translated_478_residues
MSPRNQNIRPVRKAENRWRIYPVGTMRVPVDIFASEALISVMDTETIHQLTTAASLPGVAGSVICMPDAHSGYGFPIGCV
AGFCAGKEGIISAGGVGYDIGCGVRTLLTDIPAAEVYARRGEIADALFRAIPAGLKGSSHLSLNAEEIKQILHEGAAWAV
RNGMGEKEDLWHTEENGCVAGADAAQVSTEARQRLTGQLGTLGSGNHYLEIQIVDSIHDTAAAAHFGLAENQIAISIHSG
SRGTGHQIATDYIKAMQNALPDGHPAPDPSLAYAPLTSDLGRRYLAAMKAGRNCALANRQTIAHMVRKTFLRLFPSCRIT
QLYDVSHNTCNEEHHVIEGQSRRLFVHRKGATRALPSGHAALGPLFDATGQPVLVGGSMGTASWILCAARGAEASMYSAN
HGAGRLLSRAQARKRQQPRSLMDALKHAGISVRTHSPQLLAEEAPLAYKDVDHVTDTACATGIARKVARLRPLICIKG
>Mature_477_residues
SPRNQNIRPVRKAENRWRIYPVGTMRVPVDIFASEALISVMDTETIHQLTTAASLPGVAGSVICMPDAHSGYGFPIGCVA
GFCAGKEGIISAGGVGYDIGCGVRTLLTDIPAAEVYARRGEIADALFRAIPAGLKGSSHLSLNAEEIKQILHEGAAWAVR
NGMGEKEDLWHTEENGCVAGADAAQVSTEARQRLTGQLGTLGSGNHYLEIQIVDSIHDTAAAAHFGLAENQIAISIHSGS
RGTGHQIATDYIKAMQNALPDGHPAPDPSLAYAPLTSDLGRRYLAAMKAGRNCALANRQTIAHMVRKTFLRLFPSCRITQ
LYDVSHNTCNEEHHVIEGQSRRLFVHRKGATRALPSGHAALGPLFDATGQPVLVGGSMGTASWILCAARGAEASMYSANH
GAGRLLSRAQARKRQQPRSLMDALKHAGISVRTHSPQLLAEEAPLAYKDVDHVTDTACATGIARKVARLRPLICIKG

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=489, Percent_Identity=39.8773006134969, Blast_Score=349, Evalue=4e-96,
Organism=Escherichia coli, GI2367224, Length=448, Percent_Identity=28.7946428571429, Blast_Score=131, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI17506665, Length=440, Percent_Identity=43.4090909090909, Blast_Score=351, Evalue=5e-97,
Organism=Drosophila melanogaster, GI24585217, Length=440, Percent_Identity=42.9545454545455, Blast_Score=350, Evalue=1e-96,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 50982; Mature: 50851

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPRNQNIRPVRKAENRWRIYPVGTMRVPVDIFASEALISVMDTETIHQLTTAASLPGVA
CCCCCCCCCCHHHCCCCEEEEEECCEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GSVICMPDAHSGYGFPIGCVAGFCAGKEGIISAGGVGYDIGCGVRTLLTDIPAAEVYARR
CEEEECCCCCCCCCCCHHHHHHHHCCCCCCEECCCCCEECCCCHHHHHHHCCHHHHHHHC
GEIADALFRAIPAGLKGSSHLSLNAEEIKQILHEGAAWAVRNGMGEKEDLWHTEENGCVA
CHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHCCCCCHHHCCCCCCCCEEE
GADAAQVSTEARQRLTGQLGTLGSGNHYLEIQIVDSIHDTAAAAHFGLAENQIAISIHSG
CCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCHHHHHHHHHCCCCCCEEEEEEECC
SRGTGHQIATDYIKAMQNALPDGHPAPDPSLAYAPLTSDLGRRYLAAMKAGRNCALANRQ
CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHHHHHHHHCCCCCCCCHHH
TIAHMVRKTFLRLFPSCRITQLYDVSHNTCNEEHHVIEGQSRRLFVHRKGATRALPSGHA
HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEECCCCCEEEEEECCCCCCCCCCCC
ALGPLFDATGQPVLVGGSMGTASWILCAARGAEASMYSANHGAGRLLSRAQARKRQQPRS
CCCHHHCCCCCEEEEECCCCHHHHHEEECCCCCCCEECCCCCHHHHHHHHHHHHHCCHHH
LMDALKHAGISVRTHSPQLLAEEAPLAYKDVDHVTDTACATGIARKVARLRPLICIKG
HHHHHHHCCCEEEECCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECC
>Mature Secondary Structure 
SPRNQNIRPVRKAENRWRIYPVGTMRVPVDIFASEALISVMDTETIHQLTTAASLPGVA
CCCCCCCCCHHHCCCCEEEEEECCEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GSVICMPDAHSGYGFPIGCVAGFCAGKEGIISAGGVGYDIGCGVRTLLTDIPAAEVYARR
CEEEECCCCCCCCCCCHHHHHHHHCCCCCCEECCCCCEECCCCHHHHHHHCCHHHHHHHC
GEIADALFRAIPAGLKGSSHLSLNAEEIKQILHEGAAWAVRNGMGEKEDLWHTEENGCVA
CHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHCCCCCHHHCCCCCCCCEEE
GADAAQVSTEARQRLTGQLGTLGSGNHYLEIQIVDSIHDTAAAAHFGLAENQIAISIHSG
CCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCHHHHHHHHHCCCCCCEEEEEEECC
SRGTGHQIATDYIKAMQNALPDGHPAPDPSLAYAPLTSDLGRRYLAAMKAGRNCALANRQ
CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHHHHHHHHCCCCCCCCHHH
TIAHMVRKTFLRLFPSCRITQLYDVSHNTCNEEHHVIEGQSRRLFVHRKGATRALPSGHA
HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEECCCCCEEEEEECCCCCCCCCCCC
ALGPLFDATGQPVLVGGSMGTASWILCAARGAEASMYSANHGAGRLLSRAQARKRQQPRS
CCCHHHCCCCCEEEEECCCCHHHHHEEECCCCCCCEECCCCCHHHHHHHHHHHHHCCHHH
LMDALKHAGISVRTHSPQLLAEEAPLAYKDVDHVTDTACATGIARKVARLRPLICIKG
HHHHHHHCCCEEEECCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA