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The map label for this gene is yjbC [C]

Identifier: 78357001

GI number: 78357001

Start: 2006150

End: 2007028

Strand: Reverse

Name: yjbC [C]

Synonym: Dde_1958

Alternate gene names: 78357001

Gene position: 2007028-2006150 (Counterclockwise)

Preceding gene: 78357002

Following gene: 78357000

Centisome position: 53.8

GC content: 53.47

Gene sequence:

>879_bases
ATGACTAAAAAAAATGATCTCGTAAATAAAGCGCTGGCACGACAAAAGCCTGCACGCAGCGGCCTTTCCGCCCCGCGTAC
GGCCCGTTCCGGTGCACTGGCACAATGCAATGCTCCTGCCGGACATGAGGCGGAACAGTCTGTGCGGATTAACAAGGCAC
TGGCCGATGCCGGAGTCTGTTCGCGTCGTGCAGCCGATGAACTTGTGGCTCAGGGGGTTGTAACGGTTAACGGGGTTGTG
GTGGATACCCCCGGCGTGAAAGTTGTTCCGGACAGGGATGAGCTCTGCGTTCGTGGTAAAAAGATTTTCTTGAAGTCTTC
TTCCTCCCGTAGCCATACCTATTTGATGATGCACAAGCCTGTGGAAGTGGTCACTACCGTCAGTGATCCTGAAGGGCGCA
GGACTGTCATTGATATTCTGCCCCCATTACATCGTAAAAAAAGACTTTTTCCTGTAGGAAGACTGGATTTTTTTTCAGAG
GGCCTGCTTTTGCTGACAGATGACGGCGTGCTGACCCACAGACTTACTCACCCTTCCTGGCATCTGCCCAAGACATATCT
GGTAAAGGTCAGAGGCGTGGTGCAGGACAACGATCTGCAGGCTATGCGAAAAGGGATGACGCTTGCCGAGGGGGAAAAGC
TTGCCCCCGTAGAGGTAGAGGTGCTGAGCCGGCATCATGACTGGCTGCTGTTGGAGATGACTCTTTTTCAGGGTATCAAC
CGGCAGATTCGCAGGATGTGCAGGGATGCCGGTCTGACAGTGCTTTCTTTGCACAGAGTCAGGCAGGGACCGCTGTCGCT
GGGAGAACTGCGTACGGGTGAAGTACGGGAATTGACTGACAGTGAAATTGCGGCGCTGAAGGCTTCTGTGGATTTGTAA

Upstream 100 bases:

>100_bases
CAAGTCTGCAATTGGCTACAAAAGTTATCCGTCCCTGAGGGCTTCCGGTCGGTTCTGGGCGGGCATATAATTGTGCCTTA
AAGTTTAACTTGAAGAATAT

Downstream 100 bases:

>100_bases
GACATTGGCGTGGATTGTCTTGTCAGTTGGGAGGCTGTCTGTAGCCTTCTGGCTCATTCCTTTTATATCTCTTGCAGCGT
GGCCAGCAACCAAGCTGTGC

Product: pseudouridine synthase, Rsu

Products: NA

Alternate protein names: RNA pseudouridylate synthase; RNA-uridine isomerase [H]

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MTKKNDLVNKALARQKPARSGLSAPRTARSGALAQCNAPAGHEAEQSVRINKALADAGVCSRRAADELVAQGVVTVNGVV
VDTPGVKVVPDRDELCVRGKKIFLKSSSSRSHTYLMMHKPVEVVTTVSDPEGRRTVIDILPPLHRKKRLFPVGRLDFFSE
GLLLLTDDGVLTHRLTHPSWHLPKTYLVKVRGVVQDNDLQAMRKGMTLAEGEKLAPVEVEVLSRHHDWLLLEMTLFQGIN
RQIRRMCRDAGLTVLSLHRVRQGPLSLGELRTGEVRELTDSEIAALKASVDL

Sequences:

>Translated_292_residues
MTKKNDLVNKALARQKPARSGLSAPRTARSGALAQCNAPAGHEAEQSVRINKALADAGVCSRRAADELVAQGVVTVNGVV
VDTPGVKVVPDRDELCVRGKKIFLKSSSSRSHTYLMMHKPVEVVTTVSDPEGRRTVIDILPPLHRKKRLFPVGRLDFFSE
GLLLLTDDGVLTHRLTHPSWHLPKTYLVKVRGVVQDNDLQAMRKGMTLAEGEKLAPVEVEVLSRHHDWLLLEMTLFQGIN
RQIRRMCRDAGLTVLSLHRVRQGPLSLGELRTGEVRELTDSEIAALKASVDL
>Mature_291_residues
TKKNDLVNKALARQKPARSGLSAPRTARSGALAQCNAPAGHEAEQSVRINKALADAGVCSRRAADELVAQGVVTVNGVVV
DTPGVKVVPDRDELCVRGKKIFLKSSSSRSHTYLMMHKPVEVVTTVSDPEGRRTVIDILPPLHRKKRLFPVGRLDFFSEG
LLLLTDDGVLTHRLTHPSWHLPKTYLVKVRGVVQDNDLQAMRKGMTLAEGEKLAPVEVEVLSRHHDWLLLEMTLFQGINR
QIRRMCRDAGLTVLSLHRVRQGPLSLGELRTGEVRELTDSEIAALKASVDL

Specific function: Unknown

COG id: COG1187

COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790453, Length=242, Percent_Identity=34.7107438016529, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1787524, Length=256, Percent_Identity=35.546875, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI87081838, Length=182, Percent_Identity=36.2637362637363, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1788510, Length=241, Percent_Identity=31.9502074688797, Blast_Score=104, Evalue=6e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR006145
- InterPro:   IPR000748
- InterPro:   IPR018496
- InterPro:   IPR002942 [H]

Pfam domain/function: PF00849 PseudoU_synth_2; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 32212; Mature: 32081

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: PS50889 S4 ; PS01149 PSI_RSU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKNDLVNKALARQKPARSGLSAPRTARSGALAQCNAPAGHEAEQSVRINKALADAGVC
CCCCHHHHHHHHHHCCCHHCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHH
SRRAADELVAQGVVTVNGVVVDTPGVKVVPDRDELCVRGKKIFLKSSSSRSHTYLMMHKP
HHHHHHHHHHCCEEEECCEEEECCCEEEECCCHHHHHCCCEEEEECCCCCCEEEEEEECC
VEVVTTVSDPEGRRTVIDILPPLHRKKRLFPVGRLDFFSEGLLLLTDDGVLTHRLTHPSW
EEEEEECCCCCCCEEEEECCCCHHHHHCCCCCCCHHHHCCCEEEEECCCEEEEEECCCCC
HLPKTYLVKVRGVVQDNDLQAMRKGMTLAEGEKLAPVEVEVLSRHHDWLLLEMTLFQGIN
CCCCEEEEEEECEECCCHHHHHHCCCEECCCCCCCCEEHHHHHCCCCEEEEHHHHHHHHH
RQIRRMCRDAGLTVLSLHRVRQGPLSLGELRTGEVRELTDSEIAALKASVDL
HHHHHHHHHCCCCEEEHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHCCCC
>Mature Secondary Structure 
TKKNDLVNKALARQKPARSGLSAPRTARSGALAQCNAPAGHEAEQSVRINKALADAGVC
CCCHHHHHHHHHHCCCHHCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHH
SRRAADELVAQGVVTVNGVVVDTPGVKVVPDRDELCVRGKKIFLKSSSSRSHTYLMMHKP
HHHHHHHHHHCCEEEECCEEEECCCEEEECCCHHHHHCCCEEEEECCCCCCEEEEEEECC
VEVVTTVSDPEGRRTVIDILPPLHRKKRLFPVGRLDFFSEGLLLLTDDGVLTHRLTHPSW
EEEEEECCCCCCCEEEEECCCCHHHHHCCCCCCCHHHHCCCEEEEECCCEEEEEECCCCC
HLPKTYLVKVRGVVQDNDLQAMRKGMTLAEGEKLAPVEVEVLSRHHDWLLLEMTLFQGIN
CCCCEEEEEEECEECCCHHHHHHCCCEECCCCCCCCEEHHHHHCCCCEEEEHHHHHHHHH
RQIRRMCRDAGLTVLSLHRVRQGPLSLGELRTGEVRELTDSEIAALKASVDL
HHHHHHHHHCCCCEEEHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]