| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is hphIBM [H]
Identifier: 78356947
GI number: 78356947
Start: 1953537
End: 1955945
Strand: Reverse
Name: hphIBM [H]
Synonym: Dde_1904
Alternate gene names: 78356947
Gene position: 1955945-1953537 (Counterclockwise)
Preceding gene: 78356948
Following gene: 78356946
Centisome position: 52.43
GC content: 58.28
Gene sequence:
>2409_bases ATGGAACTGTTCGCCACTGACCTTGAACGGCTGGCGTTTTTACTGGAGGCCGATGCGGCCTTGTCCATCGATCCCGAGGA TCTCGGGGCCGAGGCGGCCGAACAGAAGACTCCTGAAGAAATCCCTCCAGAAAAGCGCCCCAAGTACATCACCAATTACA TCGGCAGTAAGCAAAAATTGGTGGACTGGATATGGAAGCACACTCCAGAAGGCGTCGGCACTGTTGTTGACGCCTTTTCG GGCTCAGCCGTGGTGGGCTACATGTACAAGGCTAAGGGGTTGAAGGTAATCGCCAACGACCGGCTGCACTACTGCCACCA TGCCGCCCGGGCGATCATCGAGAACAATGGAACGCGCGTTACCGACGATGAGATCGAAGCGCTCCTGGCCGACAACGCCA AGGCCAAGACTTTCGTGCAGGACAACTTCAAGGGCATCTTTTTCGCCAAGGGCGTCCACGCCCTGATCGACACCCTGCGG GCCAACTGTGACAAGCTGTCGGGCCTTAAAAAGGACATCGCCCTGTTCGCCCTGGGCAAAACCTGCATGAGCGGCAAGGG CGGGTTTGGCCATTTTTCTTCCTCCACCGACTACGGCAAACGACAGGACTCGCCGGAGGAGTTCAAAAAGCGCTTCAAGG ACAACCTGGTGCGCATCAACGTCCTGGTTTTCGACAACGGCAAGGAGAACAAGGCGAACCGCCAGGACATCAACGAGCTT TTGCCCACGGTGAAAGCGGACCTGGCCTATTTCGATCCGCCCTATGCCACCGAATTTTCCACCACCAATTACGAGCGGGC CTACCACTTCGTGGAAGGGCTGATGACCTATTGGGACGGCCTGACGATCAAGAAAGACACCAAGGTCAAGTATTACGAAA CCGATCACCAGACTGTCACCAAGGCCAACGCCAACGAGTTTTTCAAAACCTTTCTGGGCAACGCCAAGCATATCCCCCAA TGGCTGATCTCCTACCGCGACCACGCCTATCCCGACGAGCAGGAAATGCGCAAGATCATCGGCTCTTTGGGCAAGCAAAG CCGCATGCAGTCCAAGGACCACCATTACGCCATCACCTCACGGCACGGCGAGGCCTCCAACGCCAAGGAGCGTCTGTTCA TCTGTGTCCCGGCCTCCAAGTCCAAGGCGGATGAGCAAGCCGCAGAAAAACCGGTGCCATTGGCCGCGGCCGCCAACTTT CACACCAGCATCCCGGTGGAGATCCAGATTGCTGACCCCGATGGACTCAACGCCGACGCCATGGACGTGGGTGCGACCGG CGATCCCCAGTTCAGCTTCATCCTGTGCCGGACGGGCACCAACAAAAATGGCGATCATTTCAGCGCCGAGGAGCTCTCCG GGCGCCACACGACGGCCGTCAATAAGAAGATCGATTTGCAGCACTCCCAGGAGTTCAACGACATCGTGGGCGGCGTGGTG GCCGCCGACTATCTGGAAGACGACTCCGGCGGGCGGGTGGAATGCGTGGGCGAGCTCTACGTCAACGACACCCCGGCGGC CCGATTGGCCTACAAGCTGATGAAGCGCGGGATCATCTCCCAAGTCTCTATGGAGTGCGACTACCAGGAAGGCGAGTGCT CCATTTGTCAGAAACGCTTTACCAACAAAGCCGATTACTGCCCGCATCTTCGCAAGTTCAAGGGCCGGGAATACAACGGC CGGCCCGTCTATGAAGTTCTGCACGGCGTCACCTTCACAGGGCTTGGCCTGCTCGACCGCAAAGGGGCCGATGAAAACGC CCGGATCCTGCAGGTGGCCTCGGTGAAAGATACGATTCAATCCCAAGAAAAAGGAGATTCCGCAATGGAAGACAAAACCA AGACCAACGAGGATCCTTCCAAGTCCGATACGGATGCGGCCAAGAAAAAACCGGCAGCCCTGGACGGCGATCCGGCCGCC CGCGTGACCGAGCTTGAAAAGGAAAACCGCCAGCTCAAGGCTCAGGTGGCCCAGTTGCAAAAGCGCATCGACGAGCTGGA GGCCGAACAGAAGGCCGCAGCCTGCCGCTCCCGTGCCAAAAAGCTTTTGACCAAGCTGGAGAAAAAGGGCCTTGCCTTTG CCAGCGACGAAGAGCGTGAAAGCGAGCTCAAGCGTCTGTCGGAAATGTCCGACGAGGCCTTTGCCGCCACCGAAGCCGCC TACGAGCGCATGACCAAAGGTGCCAAGCCCGAAAAGAACGACACACCGGCCGACAAAGGCGACGAAAACGGCAAAAAAGC CGACAAGTCCGGTGACGATCCACCCCTTCGAAGCGACGCCGGCGTGCGGCCCCGCGATGTCGACGATCGTAAGCTCTCCT TGGAAGACCGCCTGCGCAGTGGCTTCATGGCCGCTTATCACAACCGCCTGGGAGAAGAATCCGACGAAACCCTGCAACTC GACGCATAA
Upstream 100 bases:
>100_bases TCGCCGTCACCCTCCGACACATCGCCGACGCTTCCGGTAAGTAACCGCTGAACGCTCCCCGCAGGTCGCGGAGAGCACAG CAAACTGACCGGAGACGTTG
Downstream 100 bases:
>100_bases GGAGAAAATACCATGGCATTCATCAATCCGTGTCACCGGGGTCTGGCTTACGGTGACGGTCACATTCAAGGCAAGGGCAA ACTCGGTCAGGTGGTGCGGG
Product: adenine-specific DNA methylase-like protein
Products: NA
Alternate protein names: M.HphIB; Adenine-specific methyltransferase HphIB; M.HphI(A) [H]
Number of amino acids: Translated: 802; Mature: 802
Protein sequence:
>802_residues MELFATDLERLAFLLEADAALSIDPEDLGAEAAEQKTPEEIPPEKRPKYITNYIGSKQKLVDWIWKHTPEGVGTVVDAFS GSAVVGYMYKAKGLKVIANDRLHYCHHAARAIIENNGTRVTDDEIEALLADNAKAKTFVQDNFKGIFFAKGVHALIDTLR ANCDKLSGLKKDIALFALGKTCMSGKGGFGHFSSSTDYGKRQDSPEEFKKRFKDNLVRINVLVFDNGKENKANRQDINEL LPTVKADLAYFDPPYATEFSTTNYERAYHFVEGLMTYWDGLTIKKDTKVKYYETDHQTVTKANANEFFKTFLGNAKHIPQ WLISYRDHAYPDEQEMRKIIGSLGKQSRMQSKDHHYAITSRHGEASNAKERLFICVPASKSKADEQAAEKPVPLAAAANF HTSIPVEIQIADPDGLNADAMDVGATGDPQFSFILCRTGTNKNGDHFSAEELSGRHTTAVNKKIDLQHSQEFNDIVGGVV AADYLEDDSGGRVECVGELYVNDTPAARLAYKLMKRGIISQVSMECDYQEGECSICQKRFTNKADYCPHLRKFKGREYNG RPVYEVLHGVTFTGLGLLDRKGADENARILQVASVKDTIQSQEKGDSAMEDKTKTNEDPSKSDTDAAKKKPAALDGDPAA RVTELEKENRQLKAQVAQLQKRIDELEAEQKAAACRSRAKKLLTKLEKKGLAFASDEERESELKRLSEMSDEAFAATEAA YERMTKGAKPEKNDTPADKGDENGKKADKSGDDPPLRSDAGVRPRDVDDRKLSLEDRLRSGFMAAYHNRLGEESDETLQL DA
Sequences:
>Translated_802_residues MELFATDLERLAFLLEADAALSIDPEDLGAEAAEQKTPEEIPPEKRPKYITNYIGSKQKLVDWIWKHTPEGVGTVVDAFS GSAVVGYMYKAKGLKVIANDRLHYCHHAARAIIENNGTRVTDDEIEALLADNAKAKTFVQDNFKGIFFAKGVHALIDTLR ANCDKLSGLKKDIALFALGKTCMSGKGGFGHFSSSTDYGKRQDSPEEFKKRFKDNLVRINVLVFDNGKENKANRQDINEL LPTVKADLAYFDPPYATEFSTTNYERAYHFVEGLMTYWDGLTIKKDTKVKYYETDHQTVTKANANEFFKTFLGNAKHIPQ WLISYRDHAYPDEQEMRKIIGSLGKQSRMQSKDHHYAITSRHGEASNAKERLFICVPASKSKADEQAAEKPVPLAAAANF HTSIPVEIQIADPDGLNADAMDVGATGDPQFSFILCRTGTNKNGDHFSAEELSGRHTTAVNKKIDLQHSQEFNDIVGGVV AADYLEDDSGGRVECVGELYVNDTPAARLAYKLMKRGIISQVSMECDYQEGECSICQKRFTNKADYCPHLRKFKGREYNG RPVYEVLHGVTFTGLGLLDRKGADENARILQVASVKDTIQSQEKGDSAMEDKTKTNEDPSKSDTDAAKKKPAALDGDPAA RVTELEKENRQLKAQVAQLQKRIDELEAEQKAAACRSRAKKLLTKLEKKGLAFASDEERESELKRLSEMSDEAFAATEAA YERMTKGAKPEKNDTPADKGDENGKKADKSGDDPPLRSDAGVRPRDVDDRKLSLEDRLRSGFMAAYHNRLGEESDETLQL DA >Mature_802_residues MELFATDLERLAFLLEADAALSIDPEDLGAEAAEQKTPEEIPPEKRPKYITNYIGSKQKLVDWIWKHTPEGVGTVVDAFS GSAVVGYMYKAKGLKVIANDRLHYCHHAARAIIENNGTRVTDDEIEALLADNAKAKTFVQDNFKGIFFAKGVHALIDTLR ANCDKLSGLKKDIALFALGKTCMSGKGGFGHFSSSTDYGKRQDSPEEFKKRFKDNLVRINVLVFDNGKENKANRQDINEL LPTVKADLAYFDPPYATEFSTTNYERAYHFVEGLMTYWDGLTIKKDTKVKYYETDHQTVTKANANEFFKTFLGNAKHIPQ WLISYRDHAYPDEQEMRKIIGSLGKQSRMQSKDHHYAITSRHGEASNAKERLFICVPASKSKADEQAAEKPVPLAAAANF HTSIPVEIQIADPDGLNADAMDVGATGDPQFSFILCRTGTNKNGDHFSAEELSGRHTTAVNKKIDLQHSQEFNDIVGGVV AADYLEDDSGGRVECVGELYVNDTPAARLAYKLMKRGIISQVSMECDYQEGECSICQKRFTNKADYCPHLRKFKGREYNG RPVYEVLHGVTFTGLGLLDRKGADENARILQVASVKDTIQSQEKGDSAMEDKTKTNEDPSKSDTDAAKKKPAALDGDPAA RVTELEKENRQLKAQVAQLQKRIDELEAEQKAAACRSRAKKLLTKLEKKGLAFASDEERESELKRLSEMSDEAFAATEAA YERMTKGAKPEKNDTPADKGDENGKKADKSGDDPPLRSDAGVRPRDVDDRKLSLEDRLRSGFMAAYHNRLGEESDETLQL DA
Specific function: This methylase protects the DNA from cleavage by the HphI endonuclease [H]
COG id: COG3392
COG function: function code L; Adenine-specific DNA methylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002052 - InterPro: IPR012327 [H]
Pfam domain/function: PF02086 MethyltransfD12 [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 89238; Mature: 89238
Theoretical pI: Translated: 6.04; Mature: 6.04
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELFATDLERLAFLLEADAALSIDPEDLGAEAAEQKTPEEIPPEKRPKYITNYIGSKQKL CCCHHHHHHHHHHHHHCCCCEECCHHHHCCHHHHHCCCCCCCCCCCCHHHHHHHCCHHHH VDWIWKHTPEGVGTVVDAFSGSAVVGYMYKAKGLKVIANDRLHYCHHAARAIIENNGTRV HHHHHHCCCCHHHHHHHHCCCCEEEEEEECCCCCEEEECCCHHHHHHHHHHHHHCCCCCC TDDEIEALLADNAKAKTFVQDNFKGIFFAKGVHALIDTLRANCDKLSGLKKDIALFALGK CHHHHHHHHHCCCCHHHHHHCCCCEEEEHHHHHHHHHHHHHCHHHHHCHHHHHHHHHHHH TCMSGKGGFGHFSSSTDYGKRQDSPEEFKKRFKDNLVRINVLVFDNGKENKANRQDINEL HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEEEEECCCCCCCCHHHHHHH LPTVKADLAYFDPPYATEFSTTNYERAYHFVEGLMTYWDGLTIKKDTKVKYYETDHQTVT HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCEEEEEECCCHHHH KANANEFFKTFLGNAKHIPQWLISYRDHAYPDEQEMRKIIGSLGKQSRMQSKDHHYAITS HCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEE RHGEASNAKERLFICVPASKSKADEQAAEKPVPLAAAANFHTSIPVEIQIADPDGLNADA CCCCCCCCCCEEEEEECCCCCCHHHHHHCCCCCEEEECCCCCCCCEEEEECCCCCCCCCC MDVGATGDPQFSFILCRTGTNKNGDHFSAEELSGRHTTAVNKKIDLQHSQEFNDIVGGVV EECCCCCCCCEEEEEEECCCCCCCCCCCHHHHCCCCEECCCCEECCCHHHHHHHHHHHHH AADYLEDDSGGRVECVGELYVNDTPAARLAYKLMKRGIISQVSMECDYQEGECSICQKRF HHHHHCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHC TNKADYCPHLRKFKGREYNGRPVYEVLHGVTFTGLGLLDRKGADENARILQVASVKDTIQ CCCCCCCHHHHHHCCCCCCCCHHHHHHCCCHHHCCCHHHCCCCCCCCEEEEEHHHHHHHH SQEKGDSAMEDKTKTNEDPSKSDTDAAKKKPAALDGDPAARVTELEKENRQLKAQVAQLQ HHHCCCHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH KRIDELEAEQKAAACRSRAKKLLTKLEKKGLAFASDEERESELKRLSEMSDEAFAATEAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH YERMTKGAKPEKNDTPADKGDENGKKADKSGDDPPLRSDAGVRPRDVDDRKLSLEDRLRS HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH GFMAAYHNRLGEESDETLQLDA HHHHHHHHHCCCCCCCEEEECC >Mature Secondary Structure MELFATDLERLAFLLEADAALSIDPEDLGAEAAEQKTPEEIPPEKRPKYITNYIGSKQKL CCCHHHHHHHHHHHHHCCCCEECCHHHHCCHHHHHCCCCCCCCCCCCHHHHHHHCCHHHH VDWIWKHTPEGVGTVVDAFSGSAVVGYMYKAKGLKVIANDRLHYCHHAARAIIENNGTRV HHHHHHCCCCHHHHHHHHCCCCEEEEEEECCCCCEEEECCCHHHHHHHHHHHHHCCCCCC TDDEIEALLADNAKAKTFVQDNFKGIFFAKGVHALIDTLRANCDKLSGLKKDIALFALGK CHHHHHHHHHCCCCHHHHHHCCCCEEEEHHHHHHHHHHHHHCHHHHHCHHHHHHHHHHHH TCMSGKGGFGHFSSSTDYGKRQDSPEEFKKRFKDNLVRINVLVFDNGKENKANRQDINEL HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEEEEECCCCCCCCHHHHHHH LPTVKADLAYFDPPYATEFSTTNYERAYHFVEGLMTYWDGLTIKKDTKVKYYETDHQTVT HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCEEEEEECCCHHHH KANANEFFKTFLGNAKHIPQWLISYRDHAYPDEQEMRKIIGSLGKQSRMQSKDHHYAITS HCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEE RHGEASNAKERLFICVPASKSKADEQAAEKPVPLAAAANFHTSIPVEIQIADPDGLNADA CCCCCCCCCCEEEEEECCCCCCHHHHHHCCCCCEEEECCCCCCCCEEEEECCCCCCCCCC MDVGATGDPQFSFILCRTGTNKNGDHFSAEELSGRHTTAVNKKIDLQHSQEFNDIVGGVV EECCCCCCCCEEEEEEECCCCCCCCCCCHHHHCCCCEECCCCEECCCHHHHHHHHHHHHH AADYLEDDSGGRVECVGELYVNDTPAARLAYKLMKRGIISQVSMECDYQEGECSICQKRF HHHHHCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHC TNKADYCPHLRKFKGREYNGRPVYEVLHGVTFTGLGLLDRKGADENARILQVASVKDTIQ CCCCCCCHHHHHHCCCCCCCCHHHHHHCCCHHHCCCHHHCCCCCCCCEEEEEHHHHHHHH SQEKGDSAMEDKTKTNEDPSKSDTDAAKKKPAALDGDPAARVTELEKENRQLKAQVAQLQ HHHCCCHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH KRIDELEAEQKAAACRSRAKKLLTKLEKKGLAFASDEERESELKRLSEMSDEAFAATEAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH YERMTKGAKPEKNDTPADKGDENGKKADKSGDDPPLRSDAGVRPRDVDDRKLSLEDRLRS HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH GFMAAYHNRLGEESDETLQLDA HHHHHHHHHCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8759008 [H]