| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is dtd [H]
Identifier: 78356767
GI number: 78356767
Start: 1781558
End: 1782070
Strand: Reverse
Name: dtd [H]
Synonym: Dde_1724
Alternate gene names: 78356767
Gene position: 1782070-1781558 (Counterclockwise)
Preceding gene: 78356768
Following gene: 78356766
Centisome position: 47.77
GC content: 55.56
Gene sequence:
>513_bases ATGAAACTGCTTCTTCAACGTGTAAATCAGGCCAGTGTTACTGTTGATAACGAGGTGATCGGCGAAATCCAGTGCGGCCT GCTGGTTCTTGCGGGCTTCGGAGTACAGGATCACCCCGCCCTGCCCGAAACGGACATGTGGAGTGCACTGATCCGTAAAA TGCTTGACTTGCGCATCTTCCCTGACGGGCAAGGCAAAATGAACCTCGGTCTGCGTGACTATGGCGGCGAGTTGCTTCTG GTGCCGCAATTCACGCTATATGCCGATTGCCGCAAAGGCAAAAGGCCGTCCTTTACCGATGCAGCGCCCCCTGAGGTGGC ACAAAAACTTTTTGACCGGCTGGTGTGCGATGCGCAGACCCTGCTGCAAAAAAAAGTAAGCACCGGTCGGTTTGGTGCGG AAATGTATGTGCAGCTTACCAACTGGGGGCCGGTAACCATCGAACTTTGCGGAAACGCCCCCGGGGGACAGAACAGCCAT GCCCGACAGCAGCTCCATCCTGATCGTCGATGA
Upstream 100 bases:
>100_bases AATTGCCCAAGACGATTGTGGGCAAGGTGCTGCGCCGCGCTTTGCGCGCCGAGGAAGAAGAAAAGCTTCGGAAAAAGAAA AACACGAAAAGTGATGATCA
Downstream 100 bases:
>100_bases TTCGCGTTCTGTCCGCAATGCGCTGGCTTCGCTGCTCAGAAAGAGCCATGCCATAGAACAGGCGGAAAACGGGGAACAGG CGCTTGCGTCCTATGCGCGC
Product: D-tyrosyl-tRNA(Tyr) deacylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 170; Mature: 170
Protein sequence:
>170_residues MKLLLQRVNQASVTVDNEVIGEIQCGLLVLAGFGVQDHPALPETDMWSALIRKMLDLRIFPDGQGKMNLGLRDYGGELLL VPQFTLYADCRKGKRPSFTDAAPPEVAQKLFDRLVCDAQTLLQKKVSTGRFGAEMYVQLTNWGPVTIELCGNAPGGQNSH ARQQLHPDRR
Sequences:
>Translated_170_residues MKLLLQRVNQASVTVDNEVIGEIQCGLLVLAGFGVQDHPALPETDMWSALIRKMLDLRIFPDGQGKMNLGLRDYGGELLL VPQFTLYADCRKGKRPSFTDAAPPEVAQKLFDRLVCDAQTLLQKKVSTGRFGAEMYVQLTNWGPVTIELCGNAPGGQNSH ARQQLHPDRR >Mature_170_residues MKLLLQRVNQASVTVDNEVIGEIQCGLLVLAGFGVQDHPALPETDMWSALIRKMLDLRIFPDGQGKMNLGLRDYGGELLL VPQFTLYADCRKGKRPSFTDAAPPEVAQKLFDRLVCDAQTLLQKKVSTGRFGAEMYVQLTNWGPVTIELCGNAPGGQNSH ARQQLHPDRR
Specific function: Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could be a defense mechanism against a harmful effect of D-tyrosine [H]
COG id: COG1490
COG function: function code J; D-Tyr-tRNAtyr deacylase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DTD family [H]
Homologues:
Organism=Homo sapiens, GI30795227, Length=165, Percent_Identity=38.7878787878788, Blast_Score=93, Evalue=1e-19, Organism=Escherichia coli, GI1790320, Length=151, Percent_Identity=46.3576158940397, Blast_Score=118, Evalue=2e-28, Organism=Caenorhabditis elegans, GI115533292, Length=150, Percent_Identity=38.6666666666667, Blast_Score=88, Evalue=3e-18, Organism=Saccharomyces cerevisiae, GI6319982, Length=151, Percent_Identity=40.3973509933775, Blast_Score=103, Evalue=1e-23, Organism=Drosophila melanogaster, GI281361569, Length=153, Percent_Identity=39.8692810457516, Blast_Score=89, Evalue=2e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003732 [H]
Pfam domain/function: PF02580 Tyr_Deacylase [H]
EC number: NA
Molecular weight: Translated: 18846; Mature: 18846
Theoretical pI: Translated: 7.96; Mature: 7.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLLLQRVNQASVTVDNEVIGEIQCGLLVLAGFGVQDHPALPETDMWSALIRKMLDLRIF CCHHHHHCCCCCEEECHHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCC PDGQGKMNLGLRDYGGELLLVPQFTLYADCRKGKRPSFTDAAPPEVAQKLFDRLVCDAQT CCCCCCEECCEECCCCCEEEECCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH LLQKKVSTGRFGAEMYVQLTNWGPVTIELCGNAPGGQNSHARQQLHPDRR HHHHHHCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCHHHHHCCCCCC >Mature Secondary Structure MKLLLQRVNQASVTVDNEVIGEIQCGLLVLAGFGVQDHPALPETDMWSALIRKMLDLRIF CCHHHHHCCCCCEEECHHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCC PDGQGKMNLGLRDYGGELLLVPQFTLYADCRKGKRPSFTDAAPPEVAQKLFDRLVCDAQT CCCCCCEECCEECCCCCEEEECCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH LLQKKVSTGRFGAEMYVQLTNWGPVTIELCGNAPGGQNSHARQQLHPDRR HHHHHHCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA