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The map label for this gene is ccmF [H]

Identifier: 78356522

GI number: 78356522

Start: 1496227

End: 1498152

Strand: Reverse

Name: ccmF [H]

Synonym: Dde_1477

Alternate gene names: 78356522

Gene position: 1498152-1496227 (Counterclockwise)

Preceding gene: 78356523

Following gene: 78356521

Centisome position: 40.16

GC content: 58.1

Gene sequence:

>1926_bases
ATGCACCTTACGGGGTACTTTATTCTCTCCGCCTGTCTGCTTTTGTCGCTCACTCTGGGCGGCCTGAGCATGGCGCAGGC
CTGGCAGGGACGCAGAAACGCACTGCACCTGCTGGAAAAAGGGCAGATACTTGTCACGGGGCTCATGACCGCAGCTTCGC
TCATCCTGCTTTACGGCCTCGTGATATTTGATTTTTCCAACGCATACATCGCCAGCTACACCGACAGGCTGCTTCCTGTC
TTTTACCGGCTGACGGCATTCTGGGCAGGACAGGCAGGCTCGCTGCTGTTCTGGGCGCTGTGCGTATCGCTTTCGGGCGT
GTATTTTATGTGCACACAGGGCTACAGGGTGATGTCAGACGGTACAAAAACGTACTTCTGGCTGTTTTTCATGATCATTC
AGGCGTTTTTCGCCCTGCTTCTGACCACATGGAGCAACCCGTTCATCACCGTTAATCCGGCACCTGCCGACGGCAACGGG
CTTAACCCGCTGCTGCAGAACCCGGGCATGATATTCCACCCGCCGCTGCTCTTTCTGGGCTACGGCGGATTTGCCGTACC
GGGCTGTCTGGCACTGGCGCAGGCACTTAACAGAAACTCAGGCAATGAGGTTTCGTGGATCGAAGCCGGCCGCAATATGA
CCCTGCTGGCCTGGGCCACACTTACGGCAGGCATCATTCTGGGGTGCTGGTGGTCCTATATGGAACTGGGATGGGGCGGC
TACTGGGCATGGGACCCTGTGGAAAACGCATCCCTCATCCCGTGGCTTGTGGCTTCGGGCTATCTGCACACATCCATTGT
GGAACAACGCCGTAACAAGCTGCACAGAACAAACATATTCCTGATGGCGCTCACGACCATCTCGGCATTTTTCGCCACTT
ACCTTGTCCGCAGCGGAGTCGTGGACTCGCTGCATGCCTTCGGTGACGGCGGCGTGGGTGCGCCTCTGCTCGTGTTCATC
ATCGCCTTTACAGCGATTTCCGTCATCATCCCCATGCTGCACAAGGTGGAAGGCGCCCGCCCTCTTTCGGGCATTGCCAG
CCGCGAAGGTTTTCTTGTCATTGTGGCGTGGGTGCTTATGGCGCTCAGCATCATCATACTGCTGGGCACCATGTGGCCGG
TGTTTTCCAAATTCTGGAGCGCCAACCCCATGGGGCTGGAACCCGCCTTCTATAACAGAGTCTGTCTGCCGCTGTTTGTC
ATGCTTTCGCTGCTGCTGGTCATCTGTCCCTGGCTGGGATGGAAAGAAGGCCTGCGCAGTACAAAAGCAGCAGCGCTGGC
GGGGGGCATTTTTCTGGCCCTGCTTGCAGGCTTCTTTGTGACCGGCATACGCATTCCGGCCGCGCTGCTGGGTGCCGCCA
GTGCCGTGGGCGCCATTGCGGGCATAGGCATACTCTTTGCCACCCAGCCGCATCTGCGGCGCAACCGCTCATCCATTGCG
GCCTACGGTGTGCACATCGGGCTGCTGCTCATGGTGCTGGGCGTGGCTTTTTCCGGCCCGTACAAGGTGGAAAAAGAAAT
AGAAATCGCCAAGGGTGAAACAGTGACTCTGGGCGACTACGCCATGACCTACAAGGCGCTGTACGAAGGCGAAGGCCCCG
GTATGATTTTTATCGAAGCCGAGCTGGAAGTAGCCAAAAACGGTAAAAAGATAGGCACCCTGCACCCGCAGCGGCGCATT
TACAGCAAGTTCAGCAGAAACCAGTATGCCGAAGCGGCAACCATCCCTACGCTGGGTGATGAACCGTACGCCACGCTGCT
CGGTATCTCGCAGGACAACAAAGCCGTGCTGCGTGTCAGCATCAACCCGCTGGTCAACTGGCTGTGGATAGGCGGCACGC
TGGCCAGCCTGTTCCCCTTCCTTGGCATGCGCGCCGTGCGCTCCCGCAGGAACAACGCCGCCATGGTGCAGGAAGATGCT
GCTTAA

Upstream 100 bases:

>100_bases
CAGCTGGCCTTTTTTACAGGCAGGTTCTTCCCGCGGGCCTTCTTTTTTTACGCTCACTCACGGCTGACGCCGTATGAAAT
AGTCCTGTAAAGGAGACCAC

Downstream 100 bases:

>100_bases
ACTGGAAAAGATAGCCAAATTCTACGGCACGAGACTGGTCATAAAAGATGTAAGCCTGAGCGTGACCTCCGGCAGCATCA
CCCTGCTGGCCGGTGCCAAC

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 641; Mature: 641

Protein sequence:

>641_residues
MHLTGYFILSACLLLSLTLGGLSMAQAWQGRRNALHLLEKGQILVTGLMTAASLILLYGLVIFDFSNAYIASYTDRLLPV
FYRLTAFWAGQAGSLLFWALCVSLSGVYFMCTQGYRVMSDGTKTYFWLFFMIIQAFFALLLTTWSNPFITVNPAPADGNG
LNPLLQNPGMIFHPPLLFLGYGGFAVPGCLALAQALNRNSGNEVSWIEAGRNMTLLAWATLTAGIILGCWWSYMELGWGG
YWAWDPVENASLIPWLVASGYLHTSIVEQRRNKLHRTNIFLMALTTISAFFATYLVRSGVVDSLHAFGDGGVGAPLLVFI
IAFTAISVIIPMLHKVEGARPLSGIASREGFLVIVAWVLMALSIIILLGTMWPVFSKFWSANPMGLEPAFYNRVCLPLFV
MLSLLLVICPWLGWKEGLRSTKAAALAGGIFLALLAGFFVTGIRIPAALLGAASAVGAIAGIGILFATQPHLRRNRSSIA
AYGVHIGLLLMVLGVAFSGPYKVEKEIEIAKGETVTLGDYAMTYKALYEGEGPGMIFIEAELEVAKNGKKIGTLHPQRRI
YSKFSRNQYAEAATIPTLGDEPYATLLGISQDNKAVLRVSINPLVNWLWIGGTLASLFPFLGMRAVRSRRNNAAMVQEDA
A

Sequences:

>Translated_641_residues
MHLTGYFILSACLLLSLTLGGLSMAQAWQGRRNALHLLEKGQILVTGLMTAASLILLYGLVIFDFSNAYIASYTDRLLPV
FYRLTAFWAGQAGSLLFWALCVSLSGVYFMCTQGYRVMSDGTKTYFWLFFMIIQAFFALLLTTWSNPFITVNPAPADGNG
LNPLLQNPGMIFHPPLLFLGYGGFAVPGCLALAQALNRNSGNEVSWIEAGRNMTLLAWATLTAGIILGCWWSYMELGWGG
YWAWDPVENASLIPWLVASGYLHTSIVEQRRNKLHRTNIFLMALTTISAFFATYLVRSGVVDSLHAFGDGGVGAPLLVFI
IAFTAISVIIPMLHKVEGARPLSGIASREGFLVIVAWVLMALSIIILLGTMWPVFSKFWSANPMGLEPAFYNRVCLPLFV
MLSLLLVICPWLGWKEGLRSTKAAALAGGIFLALLAGFFVTGIRIPAALLGAASAVGAIAGIGILFATQPHLRRNRSSIA
AYGVHIGLLLMVLGVAFSGPYKVEKEIEIAKGETVTLGDYAMTYKALYEGEGPGMIFIEAELEVAKNGKKIGTLHPQRRI
YSKFSRNQYAEAATIPTLGDEPYATLLGISQDNKAVLRVSINPLVNWLWIGGTLASLFPFLGMRAVRSRRNNAAMVQEDA
A
>Mature_641_residues
MHLTGYFILSACLLLSLTLGGLSMAQAWQGRRNALHLLEKGQILVTGLMTAASLILLYGLVIFDFSNAYIASYTDRLLPV
FYRLTAFWAGQAGSLLFWALCVSLSGVYFMCTQGYRVMSDGTKTYFWLFFMIIQAFFALLLTTWSNPFITVNPAPADGNG
LNPLLQNPGMIFHPPLLFLGYGGFAVPGCLALAQALNRNSGNEVSWIEAGRNMTLLAWATLTAGIILGCWWSYMELGWGG
YWAWDPVENASLIPWLVASGYLHTSIVEQRRNKLHRTNIFLMALTTISAFFATYLVRSGVVDSLHAFGDGGVGAPLLVFI
IAFTAISVIIPMLHKVEGARPLSGIASREGFLVIVAWVLMALSIIILLGTMWPVFSKFWSANPMGLEPAFYNRVCLPLFV
MLSLLLVICPWLGWKEGLRSTKAAALAGGIFLALLAGFFVTGIRIPAALLGAASAVGAIAGIGILFATQPHLRRNRSSIA
AYGVHIGLLLMVLGVAFSGPYKVEKEIEIAKGETVTLGDYAMTYKALYEGEGPGMIFIEAELEVAKNGKKIGTLHPQRRI
YSKFSRNQYAEAATIPTLGDEPYATLLGISQDNKAVLRVSINPLVNWLWIGGTLASLFPFLGMRAVRSRRNNAAMVQEDA
A

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=643, Percent_Identity=31.7262830482115, Blast_Score=260, Evalue=2e-70,
Organism=Escherichia coli, GI1790511, Length=566, Percent_Identity=29.1519434628975, Blast_Score=215, Evalue=8e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 69885; Mature: 69885

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHLTGYFILSACLLLSLTLGGLSMAQAWQGRRNALHLLEKGQILVTGLMTAASLILLYGL
CCCHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
VIFDFSNAYIASYTDRLLPVFYRLTAFWAGQAGSLLFWALCVSLSGVYFMCTQGYRVMSD
HHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEEECCCCEEECC
GTKTYFWLFFMIIQAFFALLLTTWSNPFITVNPAPADGNGLNPLLQNPGMIFHPPLLFLG
CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHCCCCEEECHHHHHC
YGGFAVPGCLALAQALNRNSGNEVSWIEAGRNMTLLAWATLTAGIILGCWWSYMELGWGG
CCCHHHHHHHHHHHHHCCCCCCEEEHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCC
YWAWDPVENASLIPWLVASGYLHTSIVEQRRNKLHRTNIFLMALTTISAFFATYLVRSGV
EECCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
VDSLHAFGDGGVGAPLLVFIIAFTAISVIIPMLHKVEGARPLSGIASREGFLVIVAWVLM
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHH
ALSIIILLGTMWPVFSKFWSANPMGLEPAFYNRVCLPLFVMLSLLLVICPWLGWKEGLRS
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
TKAAALAGGIFLALLAGFFVTGIRIPAALLGAASAVGAIAGIGILFATQPHLRRNRSSIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCHHHHH
AYGVHIGLLLMVLGVAFSGPYKVEKEIEIAKGETVTLGDYAMTYKALYEGEGPGMIFIEA
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCEEEECHHHHHHHHHCCCCCCCEEEEEE
ELEVAKNGKKIGTLHPQRRIYSKFSRNQYAEAATIPTLGDEPYATLLGISQDNKAVLRVS
EEHHHHCCCEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCEEEEEE
INPLVNWLWIGGTLASLFPFLGMRAVRSRRNNAAMVQEDAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MHLTGYFILSACLLLSLTLGGLSMAQAWQGRRNALHLLEKGQILVTGLMTAASLILLYGL
CCCHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
VIFDFSNAYIASYTDRLLPVFYRLTAFWAGQAGSLLFWALCVSLSGVYFMCTQGYRVMSD
HHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEEECCCCEEECC
GTKTYFWLFFMIIQAFFALLLTTWSNPFITVNPAPADGNGLNPLLQNPGMIFHPPLLFLG
CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHCCCCEEECHHHHHC
YGGFAVPGCLALAQALNRNSGNEVSWIEAGRNMTLLAWATLTAGIILGCWWSYMELGWGG
CCCHHHHHHHHHHHHHCCCCCCEEEHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCC
YWAWDPVENASLIPWLVASGYLHTSIVEQRRNKLHRTNIFLMALTTISAFFATYLVRSGV
EECCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
VDSLHAFGDGGVGAPLLVFIIAFTAISVIIPMLHKVEGARPLSGIASREGFLVIVAWVLM
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHH
ALSIIILLGTMWPVFSKFWSANPMGLEPAFYNRVCLPLFVMLSLLLVICPWLGWKEGLRS
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
TKAAALAGGIFLALLAGFFVTGIRIPAALLGAASAVGAIAGIGILFATQPHLRRNRSSIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCHHHHH
AYGVHIGLLLMVLGVAFSGPYKVEKEIEIAKGETVTLGDYAMTYKALYEGEGPGMIFIEA
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCEEEECHHHHHHHHHCCCCCCCEEEEEE
ELEVAKNGKKIGTLHPQRRIYSKFSRNQYAEAATIPTLGDEPYATLLGISQDNKAVLRVS
EEHHHHCCCEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCEEEEEE
INPLVNWLWIGGTLASLFPFLGMRAVRSRRNNAAMVQEDAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]