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The map label for this gene is ccmC [H]

Identifier: 78356519

GI number: 78356519

Start: 1494172

End: 1494864

Strand: Reverse

Name: ccmC [H]

Synonym: Dde_1474

Alternate gene names: 78356519

Gene position: 1494864-1494172 (Counterclockwise)

Preceding gene: 78356520

Following gene: 78356518

Centisome position: 40.07

GC content: 58.44

Gene sequence:

>693_bases
ATGCGCGATTCCATACGGCCCCGCAGCCCCCTGCCCCGCTACGCAGCGGCCATGGCAGGACTGGCTCTGGCCGTCAGCCA
GTACTTCATCTTCGTATACGCCCCTGAAGAACAGACCATGGGCATAGTTCAAAAAATTTTCTACATCCACCTGCCGCTGG
CATGGTGGGCGTTGATCAGCTTTTTTGCGGTGTTTGTAGCCAGCGCCATGTATCTGAACAAAAGAACATGGTTCTGGGAC
AATCTGGCCGGTGCAGCCGCCGAAATCGGCGTGCTTTTTTCCGGCCTTGCTCTGGTCACGGGTTCCGTATGGGGCAGGCA
TTCGTGGGGAGTCTGGTGGACATGGGACCCGCGGCTGACCACCACGCTGGTCATGTGGTTCGTGTATGCAGGATACCTGA
TGCTGCGTTCCATGGGACTGGCCCGCGAACGGCGCGCCGTGGTGTGTGCGGTACTGGGCATAGTGGCATTCATAGATGTG
CCGCTGGTGTTCTTTTCCGCTCGACTGTGGCGGTCCATACACCCTTCCGTATTTGCCAGCCGAGGTGGCGGACTGGAGCC
GGAAATGCTGACCACAGCGGTTGTCTGTGTGCTGTGTTTCGGCTTTCTGTGGTATGCGCTGACTGCCATCAGAACACGCC
AGCTGGCGGACACGGACCGGCTTGATTCACTTGCAACCACAGACGACCTGTAA

Upstream 100 bases:

>100_bases
TGCGGGGCTGGTGCTTTTCCCCTTCATTTACAGCGGAGAAGGCTGATCCGACGGCAGACCCGCAGTCTGCCCTCATCCAC
AAAAACGATACGAGGTCCAC

Downstream 100 bases:

>100_bases
GGAGGCCCGCATGGACTCTAGCAACTGGCTGCTTATGGCCAATGCCGCTGTATGGCTCGGGGTGGGCGCCTATCTGTTCT
TCATGGCACGCACACAGCAG

Product: cytochrome c-type biogenesis protein CcmC

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CcmC [H]

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MRDSIRPRSPLPRYAAAMAGLALAVSQYFIFVYAPEEQTMGIVQKIFYIHLPLAWWALISFFAVFVASAMYLNKRTWFWD
NLAGAAAEIGVLFSGLALVTGSVWGRHSWGVWWTWDPRLTTTLVMWFVYAGYLMLRSMGLARERRAVVCAVLGIVAFIDV
PLVFFSARLWRSIHPSVFASRGGGLEPEMLTTAVVCVLCFGFLWYALTAIRTRQLADTDRLDSLATTDDL

Sequences:

>Translated_230_residues
MRDSIRPRSPLPRYAAAMAGLALAVSQYFIFVYAPEEQTMGIVQKIFYIHLPLAWWALISFFAVFVASAMYLNKRTWFWD
NLAGAAAEIGVLFSGLALVTGSVWGRHSWGVWWTWDPRLTTTLVMWFVYAGYLMLRSMGLARERRAVVCAVLGIVAFIDV
PLVFFSARLWRSIHPSVFASRGGGLEPEMLTTAVVCVLCFGFLWYALTAIRTRQLADTDRLDSLATTDDL
>Mature_230_residues
MRDSIRPRSPLPRYAAAMAGLALAVSQYFIFVYAPEEQTMGIVQKIFYIHLPLAWWALISFFAVFVASAMYLNKRTWFWD
NLAGAAAEIGVLFSGLALVTGSVWGRHSWGVWWTWDPRLTTTLVMWFVYAGYLMLRSMGLARERRAVVCAVLGIVAFIDV
PLVFFSARLWRSIHPSVFASRGGGLEPEMLTTAVVCVLCFGFLWYALTAIRTRQLADTDRLDSLATTDDL

Specific function: Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmC/CycZ/HelC family [H]

Homologues:

Organism=Escherichia coli, GI1788527, Length=185, Percent_Identity=30.2702702702703, Blast_Score=91, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003557 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 25920; Mature: 25920

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: PS00678 WD_REPEATS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDSIRPRSPLPRYAAAMAGLALAVSQYFIFVYAPEEQTMGIVQKIFYIHLPLAWWALIS
CCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
FFAVFVASAMYLNKRTWFWDNLAGAAAEIGVLFSGLALVTGSVWGRHSWGVWWTWDPRLT
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHH
TTLVMWFVYAGYLMLRSMGLARERRAVVCAVLGIVAFIDVPLVFFSARLWRSIHPSVFAS
HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
RGGGLEPEMLTTAVVCVLCFGFLWYALTAIRTRQLADTDRLDSLATTDDL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRDSIRPRSPLPRYAAAMAGLALAVSQYFIFVYAPEEQTMGIVQKIFYIHLPLAWWALIS
CCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
FFAVFVASAMYLNKRTWFWDNLAGAAAEIGVLFSGLALVTGSVWGRHSWGVWWTWDPRLT
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHH
TTLVMWFVYAGYLMLRSMGLARERRAVVCAVLGIVAFIDVPLVFFSARLWRSIHPSVFAS
HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
RGGGLEPEMLTTAVVCVLCFGFLWYALTAIRTRQLADTDRLDSLATTDDL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]