Click here to switch to the map view.

The map label for this gene is ydjX [C]

Identifier: 78356507

GI number: 78356507

Start: 1483574

End: 1484275

Strand: Direct

Name: ydjX [C]

Synonym: Dde_1462

Alternate gene names: 78356507

Gene position: 1483574-1484275 (Clockwise)

Preceding gene: 78356506

Following gene: 78356508

Centisome position: 39.77

GC content: 54.42

Gene sequence:

>702_bases
ATGACTATTCGTAACACGGGCAGGGTGATTCTGCCTGTGGCTTTGGCCGTTCTTCTGGCAGTATTCTGGTATTTTGATCT
GGGGCGTTTTTTTACGCTTGAATATGTGAAAGCTTCTCAGGATTCGTTCACAGCTTTGTACCGGCAGCACGGGGTGCTTG
TGGTGGCCGGATATATGACCCTGTACATTGCGGTGACGGCTTTGTCTCTGCCGGGGGCCACGGTTATGACTCTGGCCGGT
GCGGCTTTGTTCGGGTTCTGGGTGACTCTGGCGGCTGTTTCATTTGCTTCCACCATAGGAGCCACACTGGCATGTCTGGC
TTCTCGCTTTGTACTGCGGGGCTGGGTGCAGCGGCGGCTTGGCGGCAGGCTGGAAAAGATCAACGCAGGCATAAGGGAGG
ACGGAGCTTTTTATCTGTTTTCTCTCAGGCTTGTGCCTGTCTTTCCTTTTTTTCTTATCAATCTGGCCATGGGACTTACC
CCGCTGCCCATCAGGACATTTTACTGGGTTTCGCAACTGGGCATGCTGCCCGGAACCATTGTGTATGTGAATGCAGGTAA
AGAGCTGGGGGCCATTGAATCGCTTTCCGGCATCCTTTCGCCTTCGCTGATACTGTCTTTTGCCCTTCTGGGGCTTTTTC
CGCTGGCAGCGCGCAAGGTGCTGGAACGTGCAGCCGCATGGCGCAGCACAAAAGGAGCCTGA

Upstream 100 bases:

>100_bases
TGCGGCGTGCAGATGCTGAGAACCGGCCGCCTTGTACGCTCCGCCGGCGGAGCCTGATTGTGCCTGCTGCTGTTGTCCGG
CCTGCGGGCAAGGAGTTTTC

Downstream 100 bases:

>100_bases
TGATGGCAAAATATGACTATGATATCATCGTGATAGGCGGCGGTGCCGCCGGTCTGACCGTAACAGCCGGAGCCGCTCAG
CTGGGCGTTAAGGTGTTACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MTIRNTGRVILPVALAVLLAVFWYFDLGRFFTLEYVKASQDSFTALYRQHGVLVVAGYMTLYIAVTALSLPGATVMTLAG
AALFGFWVTLAAVSFASTIGATLACLASRFVLRGWVQRRLGGRLEKINAGIREDGAFYLFSLRLVPVFPFFLINLAMGLT
PLPIRTFYWVSQLGMLPGTIVYVNAGKELGAIESLSGILSPSLILSFALLGLFPLAARKVLERAAAWRSTKGA

Sequences:

>Translated_233_residues
MTIRNTGRVILPVALAVLLAVFWYFDLGRFFTLEYVKASQDSFTALYRQHGVLVVAGYMTLYIAVTALSLPGATVMTLAG
AALFGFWVTLAAVSFASTIGATLACLASRFVLRGWVQRRLGGRLEKINAGIREDGAFYLFSLRLVPVFPFFLINLAMGLT
PLPIRTFYWVSQLGMLPGTIVYVNAGKELGAIESLSGILSPSLILSFALLGLFPLAARKVLERAAAWRSTKGA
>Mature_232_residues
TIRNTGRVILPVALAVLLAVFWYFDLGRFFTLEYVKASQDSFTALYRQHGVLVVAGYMTLYIAVTALSLPGATVMTLAGA
ALFGFWVTLAAVSFASTIGATLACLASRFVLRGWVQRRLGGRLEKINAGIREDGAFYLFSLRLVPVFPFFLINLAMGLTP
LPIRTFYWVSQLGMLPGTIVYVNAGKELGAIESLSGILSPSLILSFALLGLFPLAARKVLERAAAWRSTKGA

Specific function: Unknown

COG id: COG0398

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TVP38/TMEM64 family [H]

Homologues:

Organism=Escherichia coli, GI87081964, Length=152, Percent_Identity=32.8947368421053, Blast_Score=64, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17532687, Length=183, Percent_Identity=28.4153005464481, Blast_Score=78, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 25306; Mature: 25175

Theoretical pI: Translated: 10.73; Mature: 10.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIRNTGRVILPVALAVLLAVFWYFDLGRFFTLEYVKASQDSFTALYRQHGVLVVAGYMT
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEHHHHH
LYIAVTALSLPGATVMTLAGAALFGFWVTLAAVSFASTIGATLACLASRFVLRGWVQRRL
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGRLEKINAGIREDGAFYLFSLRLVPVFPFFLINLAMGLTPLPIRTFYWVSQLGMLPGTI
CCHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEE
VYVNAGKELGAIESLSGILSPSLILSFALLGLFPLAARKVLERAAAWRSTKGA
EEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TIRNTGRVILPVALAVLLAVFWYFDLGRFFTLEYVKASQDSFTALYRQHGVLVVAGYMT
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEHHHHH
LYIAVTALSLPGATVMTLAGAALFGFWVTLAAVSFASTIGATLACLASRFVLRGWVQRRL
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGRLEKINAGIREDGAFYLFSLRLVPVFPFFLINLAMGLTPLPIRTFYWVSQLGMLPGTI
CCHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEE
VYVNAGKELGAIESLSGILSPSLILSFALLGLFPLAARKVLERAAAWRSTKGA
EEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]