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The map label for this gene is rarD [H]

Identifier: 78356397

GI number: 78356397

Start: 1365828

End: 1366730

Strand: Direct

Name: rarD [H]

Synonym: Dde_1350

Alternate gene names: 78356397

Gene position: 1365828-1366730 (Clockwise)

Preceding gene: 78356396

Following gene: 78356398

Centisome position: 36.62

GC content: 58.14

Gene sequence:

>903_bases
ATGTTTGATTCCGGAAAGAATCCGGTTGCCGGCGGTCTGGCGGCTGTCGGCGCTTTTGTGCTCTGGGGACTTTTGCCGCT
GTACTGGAAAATGCTGCACAGCGTGCCTCCGCTTGAAGTGCTGGGACACCGCATAGTCTGGTCACTGGTGTTTGTGGCTG
TGCTCATGCAGGTCACCCGCCGGTGGGACGAGCTGCGGCGGGCTGTTTCTTCGGTGCGCAACATGGCTGTCATGGCTGTT
GCCGGTGTACTGGTGGGCGGAAACTGGTTTTTGTACATCTGGGCGGTTAACAACGGCAGAGTGCTGGAAACAAGCCTGGG
CTATTACATCACCCCGCTGCTTAATGTGCTGATGGGCTGTGTGCTGCTGGGCGAACAACTGTCAAAAGGCCAAAAGGCCG
CACTGGTTCTGGCTGCTGCGGGGGTTGCCGTCCAGCTGACCATGCTGGGGCGTCTGCCGTGGGTGGCGCTGGTGCTTGCC
GGTTCGTTCAGCGTGTACGGGCTGCTGCGCAAAACGGCCAATGTGGAATCTGTGCCCGGACTGTTTTTTGAGACAGCCGT
CCTGACGCCGGTCGTGCTTGTGTATCTGGTGTGGCTTGACGGCAACGGTGGTGCCTTCGGCCATGCGGGAACTGCTGTTT
CGTTGCTGCTGGCCGGTGCGGGGGTCTGTACGTCTGTTCCTTTGCTGCTGTTCGCTTTTGCCGCGCGCAGAATGCATCTG
GGAACCGTGGGAATATTGCAGTACATCGCTCCCACAATCGCTTTTATGCTGGGCGTGTTTGTGTTTGACGAGCCTTTTTC
AGCAGGACGACTTATATCATTCTGCTTTATCTGGCTGGCTGTGGCCATATATAGCGGCGAGTCTCTGTGGAAACGCCGCA
GACGGGCCGTTCAACAGGGGTAG

Upstream 100 bases:

>100_bases
AGGCTTTGTTCGAACGCAGTTTTTCTCGCTGACGACCGGTTTCACACGGGCCGGAACCTGCGGGTTCCGGCTTTTTTTTT
GCGCATGCGGAGATATTTTC

Downstream 100 bases:

>100_bases
CCGGCAGCGAGGTGTTTTGTATCGGGTCGTATATAATATTATGTTGCATTTATTATTACATCCAGTAGGCTGACTCCGGA
AGGAGGACGGCCTTGTTCTT

Product: rarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MFDSGKNPVAGGLAAVGAFVLWGLLPLYWKMLHSVPPLEVLGHRIVWSLVFVAVLMQVTRRWDELRRAVSSVRNMAVMAV
AGVLVGGNWFLYIWAVNNGRVLETSLGYYITPLLNVLMGCVLLGEQLSKGQKAALVLAAAGVAVQLTMLGRLPWVALVLA
GSFSVYGLLRKTANVESVPGLFFETAVLTPVVLVYLVWLDGNGGAFGHAGTAVSLLLAGAGVCTSVPLLLFAFAARRMHL
GTVGILQYIAPTIAFMLGVFVFDEPFSAGRLISFCFIWLAVAIYSGESLWKRRRRAVQQG

Sequences:

>Translated_300_residues
MFDSGKNPVAGGLAAVGAFVLWGLLPLYWKMLHSVPPLEVLGHRIVWSLVFVAVLMQVTRRWDELRRAVSSVRNMAVMAV
AGVLVGGNWFLYIWAVNNGRVLETSLGYYITPLLNVLMGCVLLGEQLSKGQKAALVLAAAGVAVQLTMLGRLPWVALVLA
GSFSVYGLLRKTANVESVPGLFFETAVLTPVVLVYLVWLDGNGGAFGHAGTAVSLLLAGAGVCTSVPLLLFAFAARRMHL
GTVGILQYIAPTIAFMLGVFVFDEPFSAGRLISFCFIWLAVAIYSGESLWKRRRRAVQQG
>Mature_300_residues
MFDSGKNPVAGGLAAVGAFVLWGLLPLYWKMLHSVPPLEVLGHRIVWSLVFVAVLMQVTRRWDELRRAVSSVRNMAVMAV
AGVLVGGNWFLYIWAVNNGRVLETSLGYYITPLLNVLMGCVLLGEQLSKGQKAALVLAAAGVAVQLTMLGRLPWVALVLA
GSFSVYGLLRKTANVESVPGLFFETAVLTPVVLVYLVWLDGNGGAFGHAGTAVSLLLAGAGVCTSVPLLLFAFAARRMHL
GTVGILQYIAPTIAFMLGVFVFDEPFSAGRLISFCFIWLAVAIYSGESLWKRRRRAVQQG

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=294, Percent_Identity=42.5170068027211, Blast_Score=252, Evalue=3e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32368; Mature: 32368

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDSGKNPVAGGLAAVGAFVLWGLLPLYWKMLHSVPPLEVLGHRIVWSLVFVAVLMQVTR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
RWDELRRAVSSVRNMAVMAVAGVLVGGNWFLYIWAVNNGRVLETSLGYYITPLLNVLMGC
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEHHHHHHHHHHHHHHHHH
VLLGEQLSKGQKAALVLAAAGVAVQLTMLGRLPWVALVLAGSFSVYGLLRKTANVESVPG
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCC
LFFETAVLTPVVLVYLVWLDGNGGAFGHAGTAVSLLLAGAGVCTSVPLLLFAFAARRMHL
HHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
GTVGILQYIAPTIAFMLGVFVFDEPFSAGRLISFCFIWLAVAIYSGESLWKRRRRAVQQG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MFDSGKNPVAGGLAAVGAFVLWGLLPLYWKMLHSVPPLEVLGHRIVWSLVFVAVLMQVTR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
RWDELRRAVSSVRNMAVMAVAGVLVGGNWFLYIWAVNNGRVLETSLGYYITPLLNVLMGC
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEHHHHHHHHHHHHHHHHH
VLLGEQLSKGQKAALVLAAAGVAVQLTMLGRLPWVALVLAGSFSVYGLLRKTANVESVPG
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCC
LFFETAVLTPVVLVYLVWLDGNGGAFGHAGTAVSLLLAGAGVCTSVPLLLFAFAARRMHL
HHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
GTVGILQYIAPTIAFMLGVFVFDEPFSAGRLISFCFIWLAVAIYSGESLWKRRRRAVQQG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1379743; 9278503 [H]