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The map label for this gene is hypA1 [H]

Identifier: 78356355

GI number: 78356355

Start: 1327400

End: 1327816

Strand: Reverse

Name: hypA1 [H]

Synonym: Dde_1308

Alternate gene names: 78356355

Gene position: 1327816-1327400 (Counterclockwise)

Preceding gene: 78356359

Following gene: 78356354

Centisome position: 35.6

GC content: 55.16

Gene sequence:

>417_bases
ATGCAAACCCTGAATATCACAACAGCACTTTACGCCGTGTTTCTTTTGATTTACCTATCATTCATGCATGAAATGTCCAT
CGCCGCAAGCCTGATAGATATCGTCAAGGAAGAAATGGCCAAGCACGGAGCCACCCGCCTGCTGATGGTGCGGGTACGCT
ACGGCAGGCTGACCAACATCGTTCCCGAAGCCCTGCAGATGGGCTTTGAAGCCACCTGCCTTGAGGCAGGCATCAAAGAT
GCCAGACTGGAACTGGAAGAGGTTCCCCTGACGGTTGCCTGCGGCGGGTGCGGTGAAACTTTCACCCCCGAACATGAGGA
CATACTGTACATGCCCTGCCCCCGCTGCGGGCGCGAGTTTGCCCACGAGGTGCTGACAGGGCGCGAGCTTTTTGTCGATC
ACATCGAAGCAGAATAA

Upstream 100 bases:

>100_bases
CTTGGTATTGCAAATTAAGCTGATATGCGCGGCCATACGGCCGGACAGCGGCCCGCCGCATCCCGCACGCAGCCACAGCA
TACACGCAACGCGGCATGCC

Downstream 100 bases:

>100_bases
GGAAGCGCCATGGAAATTCCCGTTATCCGCAACGTTCTGGAAGCCAACGAACAGACCGCGGCACAGCTGCGCAAACTGTT
TGCTCAAAGCGATCTGCTGG

Product: hydrogenase nickel insertion protein HypA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MQTLNITTALYAVFLLIYLSFMHEMSIAASLIDIVKEEMAKHGATRLLMVRVRYGRLTNIVPEALQMGFEATCLEAGIKD
ARLELEEVPLTVACGGCGETFTPEHEDILYMPCPRCGREFAHEVLTGRELFVDHIEAE

Sequences:

>Translated_138_residues
MQTLNITTALYAVFLLIYLSFMHEMSIAASLIDIVKEEMAKHGATRLLMVRVRYGRLTNIVPEALQMGFEATCLEAGIKD
ARLELEEVPLTVACGGCGETFTPEHEDILYMPCPRCGREFAHEVLTGRELFVDHIEAE
>Mature_138_residues
MQTLNITTALYAVFLLIYLSFMHEMSIAASLIDIVKEEMAKHGATRLLMVRVRYGRLTNIVPEALQMGFEATCLEAGIKD
ARLELEEVPLTVACGGCGETFTPEHEDILYMPCPRCGREFAHEVLTGRELFVDHIEAE

Specific function: Probably plays a role in an hydrogenase nickel cofactor insertion step [H]

COG id: COG0375

COG function: function code R; Zn finger protein HypA/HybF (possibly regulating hydrogenase expression)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypA/hybF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000688
- InterPro:   IPR020538 [H]

Pfam domain/function: PF01155 HypA [H]

EC number: NA

Molecular weight: Translated: 15477; Mature: 15477

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
8.7 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
8.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTLNITTALYAVFLLIYLSFMHEMSIAASLIDIVKEEMAKHGATRLLMVRVRYGRLTNI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
VPEALQMGFEATCLEAGIKDARLELEEVPLTVACGGCGETFTPEHEDILYMPCPRCGREF
HHHHHHCCCHHHHHHHCCHHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEECCCHHHHHH
AHEVLTGRELFVDHIEAE
HHHHHCCHHHHHHHHCCC
>Mature Secondary Structure
MQTLNITTALYAVFLLIYLSFMHEMSIAASLIDIVKEEMAKHGATRLLMVRVRYGRLTNI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
VPEALQMGFEATCLEAGIKDARLELEEVPLTVACGGCGETFTPEHEDILYMPCPRCGREF
HHHHHHCCCHHHHHHHCCHHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEECCCHHHHHH
AHEVLTGRELFVDHIEAE
HHHHHCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA